Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FOC73_RS04820 Genome accession   NZ_CP053998
Coordinates   1026176..1026886 (+) Length   236 a.a.
NCBI ID   WP_002885834.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021176..1031886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS04810 (FOC73_04810) treC 1022360..1023985 (-) 1626 WP_002885868.1 alpha,alpha-phosphotrehalase -
  FOC73_RS04815 (FOC73_04815) treP 1024040..1026019 (-) 1980 WP_002885692.1 PTS system trehalose-specific EIIBC component -
  FOC73_RS04820 (FOC73_04820) treR 1026176..1026886 (+) 711 WP_002885834.1 trehalose operon repressor Regulator
  FOC73_RS04825 (FOC73_04825) - 1026940..1027503 (-) 564 WP_172855710.1 TIGR01440 family protein -
  FOC73_RS04830 (FOC73_04830) - 1027516..1027854 (-) 339 WP_014635137.1 hypothetical protein -
  FOC73_RS04835 (FOC73_04835) - 1027887..1028243 (-) 357 WP_002885732.1 hypothetical protein -
  FOC73_RS04840 (FOC73_04840) - 1028409..1029290 (-) 882 WP_002885816.1 class II fructose-bisphosphate aldolase -
  FOC73_RS04850 (FOC73_04850) - 1029714..1031009 (-) 1296 WP_002885636.1 hypothetical protein -
  FOC73_RS04855 (FOC73_04855) rplQ 1031258..1031644 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27370.02 Da        Isoelectric Point: 6.8431

>NTDB_id=449946 FOC73_RS04820 WP_002885834.1 1026176..1026886(+) (treR) [Streptococcus salivarius strain FDAARGOS_771]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQIWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=449946 FOC73_RS04820 WP_002885834.1 1026176..1026886(+) (treR) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTCCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTATCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGATCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTCGTTGATTATGCCAAGCGCCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602