Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IQE12_RS04375 Genome accession   NZ_CP065515
Coordinates   892172..893254 (+) Length   360 a.a.
NCBI ID   WP_001793589.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GDY8P96A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887172..898254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE12_RS04355 (IQE12_04355) gdpS 887542..888612 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  IQE12_RS04360 (IQE12_04360) - 888930..889985 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  IQE12_RS04365 (IQE12_04365) - 890157..890798 (-) 642 WP_000192949.1 YigZ family protein -
  IQE12_RS04370 (IQE12_04370) fakB1 890942..891808 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  IQE12_RS04375 (IQE12_04375) comFA 892172..893254 (+) 1083 WP_001793589.1 DEAD/DEAH box helicase Machinery gene
  IQE12_RS04380 (IQE12_04380) - 893247..893921 (+) 675 WP_001057965.1 ComF family protein -
  IQE12_RS04385 (IQE12_04385) hpf 893982..894554 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IQE12_RS04390 (IQE12_04390) secA 894968..897499 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  IQE12_RS04395 (IQE12_04395) - 897541..897645 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42097.58 Da        Isoelectric Point: 9.7626

>NTDB_id=449850 IQE12_RS04375 WP_001793589.1 892172..893254(+) (comFA) [Staphylococcus aureus strain GDY8P96A]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=449850 IQE12_RS04375 WP_001793589.1 892172..893254(+) (comFA) [Staphylococcus aureus strain GDY8P96A]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369