Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   STCNRZ1202_RS08055 Genome accession   NZ_CP065506
Coordinates   1553200..1556025 (-) Length   941 a.a.
NCBI ID   WP_011227549.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548200..1561025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS08010 (STCNRZ1202_08025) efp 1548477..1549037 (-) 561 WP_011227545.1 elongation factor P -
  STCNRZ1202_RS08015 (STCNRZ1202_08030) - 1549150..1549605 (-) 456 WP_002951893.1 deaminase -
  STCNRZ1202_RS08020 (STCNRZ1202_08035) - 1549624..1550685 (-) 1062 WP_002946566.1 Xaa-Pro peptidase family protein -
  STCNRZ1202_RS08025 (STCNRZ1202_08040) - 1550925..1551305 (-) 381 WP_347229617.1 hypothetical protein -
  STCNRZ1202_RS08030 (STCNRZ1202_08045) - 1551350..1551907 (-) 558 WP_347229618.1 ABC transporter ATP-binding protein -
  STCNRZ1202_RS08035 - 1551909..1552136 (-) 228 WP_258381851.1 ATP-binding cassette domain-containing protein -
  STCNRZ1202_RS08040 - 1552105..1552293 (-) 189 WP_276617722.1 ATP-binding cassette domain-containing protein -
  STCNRZ1202_RS08045 (STCNRZ1202_08055) - 1552481..1552672 (-) 192 WP_002946571.1 hypothetical protein -
  STCNRZ1202_RS08050 (STCNRZ1202_08060) - 1552834..1553106 (-) 273 WP_002946573.1 DUF3923 family protein -
  STCNRZ1202_RS08055 (STCNRZ1202_08065) uvrA 1553200..1556025 (-) 2826 WP_011227549.1 excinuclease ABC subunit UvrA Machinery gene
  STCNRZ1202_RS08060 (STCNRZ1202_08070) - 1556333..1557277 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STCNRZ1202_RS08065 (STCNRZ1202_08075) - 1557348..1558019 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  STCNRZ1202_RS08070 (STCNRZ1202_08080) - 1558136..1559017 (+) 882 WP_022096695.1 DUF4300 family protein -
  STCNRZ1202_RS08075 (STCNRZ1202_08085) rpsR 1559143..1559382 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STCNRZ1202_RS08080 (STCNRZ1202_08090) ssb 1559424..1559942 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STCNRZ1202_RS08085 (STCNRZ1202_08095) rpsF 1559954..1560244 (-) 291 WP_002951906.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103945.15 Da        Isoelectric Point: 6.0617

>NTDB_id=449815 STCNRZ1202_RS08055 WP_011227549.1 1553200..1556025(-) (uvrA) [Streptococcus thermophilus strain CNRZ1202]
MQDKLVIRGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGVPYCINGHGAIKSSSVEQIVDEVLALPERTRMQILAPIVRRRK
GQHKAIFERVQKDGYVRVRVDGEIYDVTEVPELSKSKMHNIEVVVDRLVNKEGIRSRLFDSVEAALRLADGYLIVDTMDD
NELLYSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDIDLVIPDPSKTLREGALAPWNPISSNYYPAML
EQAMEQFGVDMDTPFENLKKEEQDLILYGSGDREFHFHYVNDFGRVRDIDIPFEGVVTNINRRYHETNSDFTRNVMRGYM
NELSCPTCHGYRLNEAALSVRVGGEDGLNIGQISELSISDHLQEIDRLELGENEELIARPIIKEIKDRLTFLNNVGLNYL
TLSRMAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGAFGGQIIASGTPEAVARNKKSITGQYLSGAKSIPVPTERRVGNGCFIEVKGASENNLKNVSVKFPLGKLIAVT
GVSGSGKSTLVNSILKKKIAQELNRNSEKPGKHKSVTGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVRYKGKNIAEILDMTVDDAVDFF
AAIPKIARKVQTIKDVGLGYVTLGQSATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIVATGTPEEVVAVPKSYTGQYLKEKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=449815 STCNRZ1202_RS08055 WP_011227549.1 1553200..1556025(-) (uvrA) [Streptococcus thermophilus strain CNRZ1202]
ATGCAAGATAAGTTAGTGATTCGCGGAGCAAGAGCTCACAATTTAAAAAATATTGATGTAGAGATTCCTCGTGACAAGCT
CGTCGTCGTGACGGGGTTGTCGGGGTCTGGTAAGTCTTCTTTGGCTTTTGATACAATTTATGCAGAGGGTCAGCGCCGTT
ATGTTGAAAGTCTCTCAGCTTATGCCCGCCAATTCTTGGGAAATATGGAGAAACCTGATGTGGACTCGATTGATGGCTTG
AGTCCTGCCATCTCCATTGATCAGAAAACAACGAGTAAGAACCCTCGTTCGACTGTGGGAACTGTAACGGAGATTAATGA
CTATCTTCGTCTCCTTTATGCGCGTGTGGGTGTGCCTTATTGTATCAATGGGCATGGAGCCATTAAGTCGTCATCCGTGG
AACAGATTGTAGATGAGGTTTTAGCCCTTCCTGAACGGACACGTATGCAGATTTTAGCGCCGATTGTCCGTCGTCGAAAG
GGGCAACACAAGGCGATTTTTGAGCGCGTGCAGAAGGACGGTTATGTTCGTGTTCGTGTGGATGGTGAGATATACGATGT
GACGGAAGTCCCTGAGCTATCCAAGTCGAAGATGCATAATATTGAGGTGGTTGTGGACCGTTTGGTTAATAAGGAAGGTA
TCCGTAGTCGTCTCTTTGACTCAGTCGAGGCAGCGCTACGTTTAGCGGATGGCTACTTGATTGTGGATACTATGGATGAT
AATGAATTGCTCTACTCGGAGCATTATTCTTGTCCAGTTTGTGGTTTTACAGTGCCTGAGTTGGAGCCGCGTCTCTTTTC
CTTCAATGCGCCATTTGGTTCTTGTCCGACCTGTGACGGTTTAGGAAATAAACTAGAAGTTGATATTGATTTGGTCATTC
CTGACCCTAGTAAGACCTTGCGTGAAGGTGCACTAGCGCCTTGGAATCCTATCTCATCCAACTACTATCCTGCCATGCTT
GAGCAGGCCATGGAACAGTTTGGCGTGGATATGGATACGCCATTTGAAAATCTTAAAAAAGAAGAACAAGATTTGATTCT
CTACGGATCTGGTGACCGCGAGTTCCATTTCCATTATGTTAATGATTTTGGTAGGGTGCGTGATATTGACATTCCTTTTG
AAGGGGTTGTGACTAATATCAATCGACGCTATCATGAGACTAACAGTGATTTCACCCGCAATGTCATGCGTGGTTATATG
AATGAACTGTCATGTCCAACTTGTCATGGCTATCGTCTTAACGAAGCAGCACTCTCGGTTCGTGTTGGTGGTGAGGATGG
CTTAAATATTGGTCAAATTTCTGAGCTGTCTATTTCTGATCATCTTCAAGAAATAGATCGCCTTGAATTAGGTGAGAATG
AAGAATTGATTGCCCGTCCAATTATCAAGGAAATCAAGGATCGTCTGACTTTCTTAAACAATGTCGGCCTTAATTACTTG
ACTCTCTCTCGTATGGCCGGAACACTTTCAGGTGGTGAGAGTCAGCGTATCCGTTTGGCGACACAGATTGGCTCCAACCT
TTCTGGAGTCCTTTATGTTTTGGATGAGCCCTCTATAGGTCTTCATCAGCGTGATAATGATCGCTTGATTTCAAGTCTTA
AAAAGATGCGTGATTTGGGCAATACCTTAATTGTGGTGGAGCATGATGAAGATACCATGCGTGAAGCTGACTGGCTTATC
GATGTAGGACCTGGCGCCGGTGCCTTTGGTGGACAAATCATAGCTTCAGGAACCCCAGAAGCAGTTGCTAGAAATAAGAA
ATCAATTACTGGTCAGTACCTGTCAGGTGCTAAATCAATTCCTGTACCGACGGAACGCCGTGTAGGAAACGGCTGTTTTA
TCGAGGTTAAAGGAGCCAGTGAAAATAATCTTAAAAATGTGTCTGTCAAGTTCCCACTTGGAAAATTAATCGCAGTGACG
GGCGTTTCTGGTTCTGGAAAGTCAACTTTGGTTAACAGTATTCTCAAGAAAAAGATTGCCCAAGAGCTTAATCGAAACAG
TGAGAAACCTGGGAAACATAAATCGGTGACTGGAATCGAGAATATCGAGCGTTTGATTGATATTGATCAAAGTCCAATCG
GGCGTACTCCACGTTCCAACCCTGCAACCTACACCGGCGTCTTCGACGATATTCGCGATCTTTTTGCTCAAACCAATGAG
GCCAAGATTCGCGGTTATAAGAAGGGACGTTTCTCTTTCAATGTCAAAGGTGGCCGTTGTGAAGCCTGCTCTGGTGATGG
GATTATCAAGATTGAGATGCACTTCTTGCCTGATGTTTATGTACCTTGTGAGGTTTGCCATGGCACACGCTATAATTCTG
AGACCTTAGAAGTTCGTTATAAAGGGAAGAATATTGCTGAAATTCTGGATATGACAGTTGATGACGCGGTTGATTTCTTT
GCGGCTATCCCTAAGATTGCTCGTAAGGTGCAGACAATCAAGGATGTGGGGCTCGGGTATGTGACTTTGGGGCAATCAGC
AACAACCCTATCAGGTGGTGAGGCACAGCGTATGAAACTGGCTAGTGAACTTCACAAACGCTCTACTGGGAAGTCTTTCT
ACATTCTCGATGAGCCTACGACTGGTCTCCATACAGATGACATTGCTCGTCTCTTGAAGGTGCTTCAGCGTTTTGTGGAC
GATGGTAACACGGTTCTCGTGATTGAGCACAATCTGGATGTTATTAAGACAGCAGACCATATCATTGATTTGGGTCCTGA
AGGTGGTGTTGGTGGAGGTACTATCGTAGCTACAGGGACTCCAGAAGAGGTAGTAGCCGTTCCCAAAAGCTATACAGGAC
AATATTTGAAAGAAAAATTGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85

99.894

0.849
  uvrA Streptococcus pneumoniae TIGR4

85

99.894

0.849
  uvrA Streptococcus pneumoniae D39

85

99.894

0.849