Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOC77_RS23535 Genome accession   NZ_CP053989
Coordinates   4798340..4800097 (-) Length   585 a.a.
NCBI ID   WP_061799548.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4793340..4805097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS23515 (FOC77_23515) - 4794216..4795076 (+) 861 WP_061799543.1 MerR family transcriptional regulator -
  FOC77_RS23520 (FOC77_23520) - 4795374..4795778 (+) 405 WP_061799545.1 VOC family protein -
  FOC77_RS23525 (FOC77_23525) - 4795925..4796428 (-) 504 WP_047942600.1 MarR family transcriptional regulator -
  FOC77_RS23530 (FOC77_23530) rcrQ 4796506..4798269 (-) 1764 WP_235844512.1 ABC transporter ATP-binding protein Regulator
  FOC77_RS23535 (FOC77_23535) rcrP 4798340..4800097 (-) 1758 WP_061799548.1 ABC transporter ATP-binding protein Regulator
  FOC77_RS23540 (FOC77_23540) - 4800252..4800809 (-) 558 WP_061799550.1 thioredoxin family protein -
  FOC77_RS23545 (FOC77_23545) - 4800975..4802039 (+) 1065 WP_061799553.1 hypothetical protein -
  FOC77_RS23550 (FOC77_23550) - 4802334..4803284 (-) 951 WP_047942603.1 nuclease-related domain-containing protein -
  FOC77_RS23555 (FOC77_23555) - 4803868..4804710 (-) 843 WP_047942605.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64887.71 Da        Isoelectric Point: 5.4555

>NTDB_id=449813 FOC77_RS23535 WP_061799548.1 4798340..4800097(-) (rcrP) [Niallia circulans strain FDAARGOS_783]
MINIFKNFQKKDWMFISCALVFIILQVWLDLKLPDYMSEITRLVQTEGSELSDVLAQGGFMMLCAIGSMVASIITVFFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSGFSTASLITRSTNDIMQVQMLIILSLQIVIKAPIIAVWGILKITGKSWEWTAA
TGVAIAVLLVLIATIVLVALPKFKVIQKLTDNLNMVTREHLNGIRVVHAYNAANYHEEKFEKANKELTDTNLFTSRIMAL
MMPTISLIMSGMTLAIYWIGAVLINNAAMADRLPIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSIKRINEVLNTD
VKIKSGSKTDGDKVGEIEFRDVSFKYPGASDYILRNISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEASEGEILVDGL
NVKDYKLEALRDKIGYVSQKAVMFSGSVSSNIMFGEEDKDSVEQTNIQRAVEIAQGKDFIEKMDQQYEAAISQGGTNLSG
GQKQRLSIARAIYKDPEVYLFDDSFSALDYKTDRVLRSKLKEEINDATNIIVAQRIGTIKDADRILVLDKGEVVGMGTHD
ELMVTCDVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=449813 FOC77_RS23535 WP_061799548.1 4798340..4800097(-) (rcrP) [Niallia circulans strain FDAARGOS_783]
ATGATAAATATTTTTAAAAACTTTCAAAAAAAGGACTGGATGTTCATTTCATGTGCATTAGTCTTTATTATTTTACAAGT
ATGGCTTGATTTAAAGCTGCCAGATTATATGTCTGAAATTACAAGGCTGGTGCAGACAGAGGGAAGTGAGTTAAGCGACG
TTTTAGCTCAAGGCGGATTTATGATGCTTTGTGCGATCGGAAGTATGGTTGCTTCGATTATCACGGTTTTCTTTGCCGCA
AAAGTAGCCGCGGGCTTTTCGAATCGTCTCCGTAAAAAGGTTTTTGATAAGACATTATCTTTTTCAATGGAAGAGCTGTC
TGGTTTTTCAACAGCTAGCTTAATAACTCGTTCGACAAATGATATTATGCAAGTTCAAATGCTGATTATATTAAGCTTAC
AAATTGTTATTAAAGCACCGATCATTGCCGTGTGGGGAATTTTAAAAATTACCGGGAAAAGCTGGGAATGGACTGCTGCT
ACAGGCGTGGCGATTGCGGTGCTATTAGTGCTGATTGCTACGATTGTGTTAGTTGCTCTTCCAAAATTCAAAGTTATCCA
GAAGTTAACGGATAATCTTAACATGGTAACAAGAGAGCATTTAAACGGAATCCGGGTTGTTCATGCTTATAATGCAGCAA
ACTATCATGAGGAAAAATTTGAGAAAGCAAATAAGGAATTAACGGATACAAATTTATTCACTTCTCGAATCATGGCCCTG
ATGATGCCGACGATTTCCCTGATAATGTCGGGGATGACGCTTGCCATCTATTGGATTGGAGCAGTGTTAATCAATAATGC
GGCAATGGCAGACCGCTTGCCGATATTCTCAGACATGGTTGTCTTTTCTTCCTATGCGATGCAAATCATTATGGCGTTTA
TGATGGTTTCCATTACATTTGTTCTTCTTCCTCGTGCGGCAGTTTCGATTAAGAGAATAAACGAAGTGCTGAATACCGAT
GTGAAAATTAAGAGTGGTTCGAAAACAGATGGAGACAAGGTAGGAGAGATTGAATTTCGCGATGTCAGCTTTAAATACCC
TGGTGCGAGTGATTATATCCTCCGAAATATTAGCTTTACTGCTTCCAAAGGAGAGACTGTTGCGATTATTGGTTCTACTG
GGAGCGGAAAAAGTACTCTGTTGAACTTGATACCTCGCTTTATGGAAGCAAGCGAGGGCGAAATTTTGGTAGATGGTCTA
AATGTGAAGGATTATAAGCTAGAAGCATTACGAGACAAAATTGGATATGTATCGCAAAAAGCAGTTATGTTCAGTGGCTC
TGTGTCTTCCAACATTATGTTTGGAGAGGAAGATAAGGATTCAGTGGAACAGACAAATATCCAACGAGCAGTGGAAATTG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATATGAGGCCGCGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGACAGAAACAAAGATTATCGATTGCTCGTGCCATTTATAAAGATCCAGAAGTCTATTTATTTGATGATTCTTTTTCCGC
GTTGGACTATAAAACAGATCGTGTCCTACGCTCTAAACTGAAAGAAGAGATCAATGATGCCACTAATATTATTGTGGCAC
AGCGAATTGGAACAATTAAGGATGCTGACCGCATTCTGGTATTAGATAAAGGCGAAGTGGTTGGAATGGGTACGCATGAT
GAGTTGATGGTAACTTGCGATGTTTATCAAGAAATTGCCTTATCACAATTATCAAAGGAGGAACTCGAAATTGGCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(354-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.085

100

0.523