Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOC77_RS16925 Genome accession   NZ_CP053989
Coordinates   3390578..3391642 (-) Length   354 a.a.
NCBI ID   WP_061798515.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3385578..3396642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS16885 (FOC77_16885) - 3386552..3387349 (+) 798 WP_061798501.1 YqhG family protein -
  FOC77_RS16890 (FOC77_16890) - 3387413..3387601 (-) 189 WP_061798507.1 YqzE family protein -
  FOC77_RS16895 (FOC77_16895) comGG 3387656..3388036 (-) 381 WP_061798510.1 competence type IV pilus minor pilin ComGG -
  FOC77_RS16900 (FOC77_16900) comGF 3388043..3388489 (-) 447 WP_235844479.1 competence type IV pilus minor pilin ComGF -
  FOC77_RS16905 (FOC77_16905) - 3388486..3388809 (-) 324 WP_047941177.1 hypothetical protein -
  FOC77_RS16910 (FOC77_16910) comGD 3388793..3389230 (-) 438 WP_082138260.1 competence type IV pilus minor pilin ComGD -
  FOC77_RS16915 (FOC77_16915) comGC 3389227..3389541 (-) 315 WP_047941179.1 competence type IV pilus major pilin ComGC -
  FOC77_RS16920 (FOC77_16920) comGB 3389554..3390591 (-) 1038 WP_172885239.1 competence type IV pilus assembly protein ComGB -
  FOC77_RS16925 (FOC77_16925) comGA 3390578..3391642 (-) 1065 WP_061798515.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC77_RS16935 (FOC77_16935) - 3392003..3392935 (-) 933 WP_047941244.1 cation diffusion facilitator family transporter -
  FOC77_RS16940 (FOC77_16940) - 3392979..3394022 (-) 1044 WP_061798520.1 NAD(P)-binding domain-containing protein -
  FOC77_RS16945 (FOC77_16945) - 3394293..3394991 (+) 699 WP_061798524.1 helix-turn-helix domain-containing protein -
  FOC77_RS16950 (FOC77_16950) - 3395026..3395661 (-) 636 WP_061798530.1 MBL fold metallo-hydrolase -
  FOC77_RS16955 (FOC77_16955) - 3395675..3395992 (-) 318 WP_047941248.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 40148.35 Da        Isoelectric Point: 8.0230

>NTDB_id=449798 FOC77_RS16925 WP_061798515.1 3390578..3391642(-) (comGA) [Niallia circulans strain FDAARGOS_783]
MLSIEALANRIICEAVEQNATDIHITPKQKESVLQFRIANHLINYLVISANECDKLISHFKFTASMDIGERRKPQNGSIS
TTVKGQYIGLRLSTLPSHPHESLVIRILSDQNMLPIYHISLFPNISRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKTQENVLQVQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAHIAIRASLTGHLVLSTMH
TRDAKGAIHRLLEFGIKETEIEQTLIAITAQRLVEMVCPFCDQDCSPNCYRLDNRLKRSTVFEMITGRMISDILYNRREY
QRANYKSLGDIISKGIALGYIKKGEYERWIYDEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=449798 FOC77_RS16925 WP_061798515.1 3390578..3391642(-) (comGA) [Niallia circulans strain FDAARGOS_783]
GTGTTATCGATTGAAGCTCTAGCAAATCGTATTATATGTGAAGCAGTAGAACAGAATGCTACTGATATTCACATAACCCC
AAAACAGAAGGAATCTGTTCTCCAATTTAGAATTGCCAATCATTTAATTAATTACTTAGTAATTTCAGCAAATGAATGTG
ACAAGTTGATCTCTCATTTTAAATTTACAGCTTCTATGGATATTGGCGAAAGAAGAAAACCGCAAAATGGATCCATTTCC
ACAACAGTCAAAGGTCAGTATATTGGCTTACGACTTTCAACCTTACCATCTCACCCTCATGAGAGTTTAGTAATTCGTAT
ACTTTCCGACCAAAATATGCTTCCAATCTATCACATCTCTTTATTTCCAAATATTTCTCGTAAATTAATCTCCTTGCTAA
AGCACGCACACGGATTAATAATTCTGACCGGTCCAACTGGATCAGGGAAAACAACAACACTCTACTCTCTCCTAAATGAA
AATGCTCATCTTTATCAGCGAAATGTAATTAGTTTAGAAGATCCCATTGAAAAAACGCAGGAAAACGTTTTGCAAGTTCA
AGTCAATGAGAAAGCAGGTATTACGTATTCCACTGGCTTAAAAGCAATTCTTCGCCATGATCCAGATATTATTATGGTTG
GAGAAATCCGCGATAAAGAAACCGCTCATATTGCAATAAGGGCGAGTTTAACAGGTCATTTAGTATTGAGCACAATGCAT
ACGAGGGATGCGAAAGGTGCGATTCATCGACTGCTAGAATTTGGTATTAAGGAGACTGAAATTGAACAAACCTTAATTGC
TATTACTGCTCAAAGACTAGTTGAAATGGTGTGTCCATTTTGTGATCAAGATTGTTCTCCTAACTGTTACCGTTTAGATA
ACCGCTTAAAACGATCAACCGTGTTTGAAATGATAACAGGCAGGATGATTTCTGATATTCTCTATAACCGAAGAGAATAT
CAGAGAGCGAACTATAAATCACTAGGAGATATTATTTCCAAAGGGATAGCGCTAGGTTATATAAAGAAAGGAGAATATGA
ACGGTGGATTTATGATGAAGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

53.631

100

0.542