Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FOC77_RS16625 Genome accession   NZ_CP053989
Coordinates   3329179..3330867 (-) Length   562 a.a.
NCBI ID   WP_061798446.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3324179..3335867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS25820 - 3324912..3325148 (-) 237 WP_309325049.1 hypothetical protein -
  FOC77_RS16610 (FOC77_16610) spo0A 3325441..3326223 (-) 783 WP_047941117.1 sporulation transcription factor Spo0A -
  FOC77_RS16615 (FOC77_16615) - 3326699..3327613 (+) 915 WP_047941118.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FOC77_RS16620 (FOC77_16620) spoIVB 3327676..3328968 (-) 1293 WP_047941119.1 SpoIVB peptidase -
  FOC77_RS16625 (FOC77_16625) recN 3329179..3330867 (-) 1689 WP_061798446.1 DNA repair protein RecN Machinery gene
  FOC77_RS16630 (FOC77_16630) argR 3330884..3331333 (-) 450 WP_047941121.1 transcriptional regulator ArgR -
  FOC77_RS16635 (FOC77_16635) - 3331626..3332456 (-) 831 WP_047941122.1 TlyA family RNA methyltransferase -
  FOC77_RS16640 (FOC77_16640) dxs 3332464..3334356 (-) 1893 WP_047941356.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FOC77_RS16645 (FOC77_16645) - 3334793..3335686 (-) 894 WP_061798448.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63483.60 Da        Isoelectric Point: 4.9240

>NTDB_id=449797 FOC77_RS16625 WP_061798446.1 3329179..3330867(-) (recN) [Niallia circulans strain FDAARGOS_783]
MLSELSIKNFAIIESLSISFKKGLTVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIEDGHPCFQKM
NEFGIDIDEGAIVLRRDIALSGKSVCRINGKLITIAVLREIGSTLIDIHGQHEHQELMDETKHLQLLDTFAMGELAPVLE
EYEEIYRSYTQTQKKLMNLTENEQQMAQRLDLLQFQFNEIESAHLKINEDDELLEERKKLSNFEKIYDSIQTGYTALRGE
QKGLDWLGEVMGNMEEAASLDTEYKDMAESVSNSYYILEDIARQMRSALDYLEYDPERLNEIETRLNEINTLKRKYGKTV
AEILEYAAKIEEELETLQNKETHIDLLEKELASLKKDLLVEAKELTALRKRAALRLTDSIHQELKELYMEKTVFEVRIHA
DENNVTKKGIDEVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIHH
VSVDSQVLCISHLPQVAAMADTHLFIAKKIEDGRTSTSVTPLVQQDKVKEIGRMISGAEITELTKKHAKELLKLAQKAKN
KI

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=449797 FOC77_RS16625 WP_061798446.1 3329179..3330867(-) (recN) [Niallia circulans strain FDAARGOS_783]
TTGCTAAGTGAATTATCGATTAAAAATTTTGCAATCATTGAAAGTCTATCCATATCATTTAAAAAGGGACTGACTGTATT
AACTGGTGAAACAGGTGCAGGAAAGTCTATCATTATTGATGCGATCAATTTATTAGTTGGAGGACGCGGTTCGGCGGAAT
TTGTTCGCCATGGAGAAGAAAAAGCAGAAATAGAAGGGCTATTTTATATAGAAGACGGTCATCCTTGTTTTCAAAAAATG
AATGAGTTTGGTATCGATATAGATGAGGGTGCTATTGTATTAAGAAGAGATATAGCTTTATCTGGTAAGAGTGTCTGCCG
GATAAATGGCAAGCTTATCACAATCGCTGTATTAAGAGAAATAGGTTCCACTTTAATTGATATTCATGGTCAGCATGAAC
ATCAAGAATTAATGGATGAAACGAAGCACTTACAGTTGCTGGATACTTTTGCAATGGGAGAATTAGCTCCTGTTTTAGAA
GAATATGAAGAAATTTATCGCTCTTATACTCAAACTCAAAAGAAACTAATGAATTTAACAGAAAATGAACAGCAAATGGC
TCAAAGACTTGATTTATTACAATTTCAGTTTAATGAAATTGAAAGTGCTCATTTGAAAATTAATGAAGATGATGAGCTGT
TAGAAGAAAGGAAGAAATTAAGCAATTTCGAGAAAATTTATGATAGCATACAAACAGGCTATACTGCTCTTAGGGGAGAA
CAAAAAGGGCTGGATTGGCTTGGTGAGGTCATGGGGAATATGGAGGAAGCTGCAAGCTTAGACACTGAATACAAGGATAT
GGCTGAGTCTGTCTCCAATAGCTATTATATTTTAGAGGATATTGCAAGACAGATGAGAAGTGCTTTAGATTACCTAGAAT
ATGACCCCGAAAGGTTAAATGAGATTGAAACAAGACTAAATGAAATCAATACCTTAAAACGCAAATATGGAAAAACAGTA
GCAGAGATCCTAGAGTATGCTGCAAAAATAGAGGAAGAATTAGAAACATTACAAAATAAAGAAACCCATATCGATTTATT
GGAAAAGGAGTTAGCTTCTCTTAAAAAAGATCTTTTAGTGGAAGCAAAGGAATTGACTGCCTTAAGAAAGAGAGCAGCTC
TTCGTCTGACAGATAGTATTCATCAAGAATTAAAAGAACTCTACATGGAAAAGACTGTTTTTGAAGTAAGAATTCATGCT
GATGAGAACAATGTTACGAAAAAAGGGATAGATGAAGTGGAATTTTACATTTCTACAAATCCTGGAGAACCGTTAAAACC
ACTATCCAAAATTGTGTCCGGTGGAGAGCTTTCCAGAATGATGCTTGCTTTAAAAAGCATTTTCTCTAAGCATCAAGGGG
TGACATCCATCATATTTGATGAGGTAGATACTGGGGTGAGTGGAAGAGTAGCACAAGCAATCGCTGAAAAAATCCACCAT
GTGTCGGTTGATTCTCAAGTGCTCTGTATTTCCCATCTGCCGCAGGTGGCAGCAATGGCAGATACCCATTTATTTATCGC
AAAAAAAATTGAGGATGGCCGCACATCTACGTCTGTCACACCATTAGTGCAGCAAGATAAGGTAAAAGAGATCGGACGAA
TGATTTCAGGAGCGGAAATTACGGAATTAACAAAAAAACATGCAAAAGAACTGTTAAAATTAGCGCAAAAAGCTAAGAAT
AAAATATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.066

100

0.644