Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FOC77_RS02520 Genome accession   NZ_CP053989
Coordinates   489815..490771 (+) Length   318 a.a.
NCBI ID   WP_047944228.1    Uniprot ID   A0A0J1L0Y7
Organism   Niallia circulans strain FDAARGOS_783     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 484815..495771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS02500 (FOC77_02500) qoxA 485790..486719 (+) 930 WP_047944237.1 cytochrome aa3 quinol oxidase subunit II -
  FOC77_RS02505 (FOC77_02505) qoxB 486709..488661 (+) 1953 WP_061800080.1 cytochrome aa3 quinol oxidase subunit I -
  FOC77_RS02510 (FOC77_02510) qoxC 488658..489269 (+) 612 WP_172866579.1 cytochrome aa3 quinol oxidase subunit III -
  FOC77_RS02515 (FOC77_02515) qoxD 489276..489581 (+) 306 WP_047944233.1 cytochrome aa3 quinol oxidase subunit IV -
  FOC77_RS02520 (FOC77_02520) ceuB 489815..490771 (+) 957 WP_047944228.1 ABC transporter permease Machinery gene
  FOC77_RS02525 (FOC77_02525) - 490761..491714 (+) 954 WP_047944232.1 iron chelate uptake ABC transporter family permease subunit -
  FOC77_RS02530 (FOC77_02530) - 491708..492466 (+) 759 WP_047944226.1 ABC transporter ATP-binding protein -
  FOC77_RS02535 (FOC77_02535) - 492751..493701 (+) 951 WP_061800086.1 siderophore ABC transporter substrate-binding protein -
  FOC77_RS02540 (FOC77_02540) - 493875..494867 (+) 993 WP_061800091.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35245.62 Da        Isoelectric Point: 9.7763

>NTDB_id=449775 FOC77_RS02520 WP_047944228.1 489815..490771(+) (ceuB) [Niallia circulans strain FDAARGOS_783]
MKIRHLTIMLIVLSIISLFVGVIDIHPQNIFHLTADQREILLISRFPRLVSIIIAGVSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILVALMLFTGESPIIKMLIAFVFALGGTFLFMRILNMIKFKDAIFIPLIGLMLGNIVSSITTFFAMKYDLI
QNMSSWLQGDFSLIMEGRYELLYISIPMVIVAYLYANKFTIAGLGEDFSTNLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGAVFVLFCDILGRVIIYPYEISIGVMVGVIGSGVFLYLLVRRKSYDAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=449775 FOC77_RS02520 WP_047944228.1 489815..490771(+) (ceuB) [Niallia circulans strain FDAARGOS_783]
ATGAAAATTAGACACTTAACTATAATGTTAATAGTTTTATCTATCATCTCCCTATTTGTAGGAGTAATTGATATTCATCC
ACAAAATATTTTTCATTTAACAGCAGATCAGAGAGAAATTCTCCTGATTAGCAGATTTCCTCGCTTAGTCAGTATTATTA
TAGCTGGTGTTAGTCTAAGTATTTGTGGACTTATCATGCAGCAGATATCGAGAAATAAATTTGTTTCTCCTACAACTGCT
GGAACAATGGACTGGGCGAGACTTGGGATTTTAGTAGCTTTAATGCTTTTTACAGGCGAGAGCCCGATTATTAAAATGTT
AATCGCTTTTGTATTCGCACTTGGAGGAACCTTTTTGTTTATGCGAATACTTAATATGATTAAATTTAAAGACGCTATCT
TTATTCCATTAATCGGTTTAATGCTAGGGAATATTGTTAGCTCGATTACCACTTTTTTTGCCATGAAATATGATTTGATT
CAAAATATGTCTTCATGGTTACAAGGAGATTTTTCTTTAATCATGGAAGGACGTTATGAACTTCTTTACATAAGTATTCC
GATGGTTATTGTTGCATACTTATATGCCAATAAATTCACAATTGCTGGACTAGGTGAGGATTTTTCTACTAATCTTGGTC
TCAATCACAAAAGAGTAGTGAATATAGGGTTAATTATCGTAGCGTTAGTCTCTTCTGTTGTATTGCTGACAGTAGGAATG
ATTCCTTTTCTAGGTCTAATTATTCCCAATATTGTTTCGTTATACAGAGGAGATAATCTGAAAAATAGCTTAACCCATAC
AGCATTATTAGGAGCAGTCTTTGTATTATTCTGTGATATTCTTGGCAGAGTGATTATTTATCCGTATGAGATATCGATCG
GTGTGATGGTGGGTGTCATTGGAAGTGGAGTATTCTTGTATTTACTAGTAAGGAGAAAGTCTTATGATGCAACCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1L0Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.381

99.057

0.519