Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC77_RS01150 Genome accession   NZ_CP053989
Coordinates   221618..222997 (+) Length   459 a.a.
NCBI ID   WP_047943692.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 216618..227997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS01130 (FOC77_01130) - 216894..217355 (+) 462 WP_047943688.1 CtsR family transcriptional regulator -
  FOC77_RS01135 (FOC77_01135) - 217386..217934 (+) 549 WP_047943689.1 UvrB/UvrC motif-containing protein -
  FOC77_RS01140 (FOC77_01140) - 217936..219003 (+) 1068 WP_061800922.1 protein arginine kinase -
  FOC77_RS01145 (FOC77_01145) clpC 219026..221479 (+) 2454 WP_061800921.1 ATP-dependent protease ATP-binding subunit ClpC -
  FOC77_RS01150 (FOC77_01150) radA 221618..222997 (+) 1380 WP_047943692.1 DNA repair protein RadA Machinery gene
  FOC77_RS01155 (FOC77_01155) - 223372..224445 (+) 1074 WP_047943693.1 PIN/TRAM domain-containing protein -
  FOC77_RS01160 (FOC77_01160) ispD 224463..225167 (+) 705 WP_061800920.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FOC77_RS01165 (FOC77_01165) ispF 225213..225695 (+) 483 WP_061800919.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FOC77_RS01170 (FOC77_01170) gltX 225792..227249 (+) 1458 WP_061800918.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49911.46 Da        Isoelectric Point: 7.2496

>NTDB_id=449771 FOC77_RS01150 WP_047943692.1 221618..222997(+) (radA) [Niallia circulans strain FDAARGOS_783]
MAKRKTKFLCQECGYESAKWMGKCPGCGNWNTMVEEVEKSAVQRKGAFAHTAASTVAAKPIPITSIETVNEPRIYTDLME
LNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSSQLAHKKHSVLYVSGEESQKQTKLRADRLGVVSDHLLVYSETNLEEI
SRTIENTNVEFVVIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVIIPANNLSGLKAPKGLEVVGVHTVADALKAALGD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=449771 FOC77_RS01150 WP_047943692.1 221618..222997(+) (radA) [Niallia circulans strain FDAARGOS_783]
ATGGCTAAAAGAAAAACAAAGTTTCTTTGCCAGGAATGTGGATATGAATCAGCAAAATGGATGGGGAAATGTCCTGGTTG
TGGAAACTGGAATACAATGGTGGAAGAAGTAGAGAAGAGTGCTGTTCAAAGAAAAGGTGCGTTTGCTCACACTGCAGCTA
GTACTGTTGCAGCAAAGCCTATTCCTATAACAAGCATTGAAACGGTTAATGAGCCAAGAATATATACCGACTTAATGGAG
TTAAACCGTGTTCTTGGCGGAGGAGTCGTGCGTGGTTCTCTTGTATTAATAGGTGGAGATCCCGGGATTGGAAAATCAAC
GCTTCTTTTACAAGTATCCTCGCAGTTAGCACATAAGAAACATTCTGTCTTATATGTTTCTGGAGAAGAATCGCAAAAGC
AGACAAAGTTAAGAGCAGACCGATTGGGTGTAGTTTCCGATCATTTGCTTGTGTATTCAGAAACCAATCTAGAGGAAATA
AGTAGAACCATTGAAAATACGAATGTGGAATTTGTGGTTATTGATTCGATTCAGACAATCTATCATCCGGAGGTCACCTC
TGCCCCAGGAAGTGTTTCTCAAGTTAGAGAATGTACAGCAGAATTAATGCGGATAGGAAAAACAAAAGGAATAGCAATCT
TTATTGTAGGACATGTCACAAAGGAAGGATCGATTGCAGGACCAAGATTATTGGAGCATATGGTTGATACTGTACTGTAT
TTTGAAGGAGAAAGACATCATACATATCGTATTTTACGCGCTGTAAAGAACCGTTTTGGCTCTACTAATGAGATGGGTAT
TTTTGAGATGAAGGAATTTGGACTGGAAGAGGTAGAGAATCCCTCTGAAATTTTCTTAGAAGAGCGATCACAGGGTGCCG
CTGGTTCCACTGTTGTAGCATCAATGGAAGGAACAAGACCAGTTCTGGTTGAAATCCAAGCATTGATTTCACCGACTAGT
TTTGGGAATCCACGAAGGATGGCAACGGGCATAGATCATAATAGAGTGCCGTTGTTAATGGCGGTATTAGAAAAAAGAGT
TGGTATGTTATTGCAGAATCAAGATGCTTATTTAAAAGTAGCTGGTGGTGTAAAACTAGATGAGCCTGCCATTGATTTGG
CGATTGCTGTAAGCATTGCCTCGAGTTTTAGAGATAAACCGACAAGAGCAACTGATTGTATTATTGGGGAAGTTGGCTTA
ACTGGAGAAGTTAGAAGAGTATCCCGTATTGAGCAAAGGGTGCAGGAGGCTGCTAAATTAGGTTTTGAGCGTGTTATTAT
TCCAGCTAATAATTTAAGTGGTTTGAAGGCTCCAAAGGGCTTAGAGGTCGTTGGCGTTCATACGGTTGCGGATGCTTTAA
AAGCGGCTTTAGGTGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.342

100

0.773
  radA Streptococcus mitis NCTC 12261

62.335

98.911

0.617
  radA Streptococcus pneumoniae Rx1

62.335

98.911

0.617
  radA Streptococcus pneumoniae D39

62.335

98.911

0.617
  radA Streptococcus pneumoniae R6

62.335

98.911

0.617
  radA Streptococcus pneumoniae TIGR4

62.335

98.911

0.617
  radA Streptococcus mitis SK321

62.115

98.911

0.614