Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC79_RS06995 Genome accession   NZ_CP053988
Coordinates   1518991..1520784 (+) Length   597 a.a.
NCBI ID   WP_023391715.1    Uniprot ID   W1Q3A3
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513991..1525784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS06975 (FOC79_06975) - 1514907..1515671 (-) 765 WP_023391711.1 ABC transporter permease -
  FOC79_RS06980 (FOC79_06980) - 1515655..1516593 (-) 939 WP_035364138.1 ATP-binding cassette domain-containing protein -
  FOC79_RS06985 (FOC79_06985) - 1516784..1517239 (+) 456 WP_035364140.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC79_RS06990 (FOC79_06990) rcrP 1517232..1519001 (+) 1770 WP_023391714.1 ABC transporter ATP-binding protein Regulator
  FOC79_RS06995 (FOC79_06995) rcrQ 1518991..1520784 (+) 1794 WP_023391715.1 ABC transporter ATP-binding protein Regulator
  FOC79_RS07000 (FOC79_07000) - 1520847..1521725 (-) 879 WP_035364142.1 YitT family protein -
  FOC79_RS07005 (FOC79_07005) - 1521864..1522415 (+) 552 WP_023391717.1 hypothetical protein -
  FOC79_RS07010 (FOC79_07010) - 1522446..1523030 (+) 585 WP_023391718.1 NAD(P)H-dependent oxidoreductase -
  FOC79_RS07015 (FOC79_07015) - 1523051..1523569 (+) 519 WP_023391719.1 hypothetical protein -
  FOC79_RS07020 (FOC79_07020) - 1523573..1524187 (+) 615 WP_035364144.1 hypothetical protein -
  FOC79_RS07025 (FOC79_07025) - 1524215..1525036 (+) 822 WP_023391721.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65285.74 Da        Isoelectric Point: 5.1737

>NTDB_id=449755 FOC79_RS06995 WP_023391715.1 1518991..1520784(+) (rcrQ) [Abiotrophia defectiva strain FDAARGOS_785]
MANKTSKPSLFKGIKPYIQGFQLPLVLALIGATISSMITVYGPRKLEEMTNLIGQGMSGKMDLKAISAVGFLLAGLYAFG
AVINYLQGFIITTMIQRLSQRLRRAIATKINRLPLAYFDSHSQGDTLSRVTNDVDTVGQSLNQSLANVISSVIMIVAVLI
MMFTANVILSLVTVISVFVGFILIMFIGMRAQGFFKAQQVNLAAVNGFVEETYSGHNVVTSYNAVPESLAQFAKLNGQLH
DSIWKSQFISGIMMPLMIFIGNFAYVLVIIVGAILALQEGSGVTMGTIVAFMVYVRIFAQPISQLAQGMTSLQQAGAAMS
RVSEFLNEEEMADDHDLPQALTDIKGQVTFDQVTFGYSPDKTIINDFTAQARPGKKIAIVGPTGAGKTTIVNLLMKFYEI
NQGTIAIDGVDLAQMKRSEVHDAFAMVLQDTWLFEGTIKENLIFNQTGISDDQVIEAAKAAGVHHYIMTLPKGYDTVLDD
TVTLSVGQKQLMTIARALLKDAPLLILDEATSSVDTRTEELIQQAMDTLMEGRTSFVIAHRLSTIKNADYILVMQEGRII
EQGNHQELMAQGGFYADLYNSQFDKNSSGMDFEELLA

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=449755 FOC79_RS06995 WP_023391715.1 1518991..1520784(+) (rcrQ) [Abiotrophia defectiva strain FDAARGOS_785]
ATGGCCAATAAGACATCCAAACCATCCCTCTTTAAGGGAATTAAACCTTATATTCAAGGCTTTCAACTGCCCTTGGTCTT
GGCTCTGATTGGGGCGACCATTTCCAGCATGATTACGGTCTATGGGCCACGGAAGTTGGAAGAAATGACCAACCTGATTG
GCCAAGGCATGTCAGGCAAGATGGACCTCAAGGCCATCTCAGCGGTGGGTTTCTTGCTGGCCGGGCTCTACGCCTTCGGG
GCGGTGATTAACTACCTCCAAGGTTTCATTATCACCACCATGATTCAGCGCCTGTCCCAGCGTCTTCGCCGGGCCATCGC
CACCAAGATTAACCGTCTTCCCTTGGCCTACTTCGATAGTCATTCCCAAGGGGATACCCTGTCACGGGTGACTAACGATG
TGGACACCGTCGGTCAATCCCTTAACCAGAGTCTGGCCAATGTGATTTCTTCGGTTATCATGATAGTCGCGGTCCTGATT
ATGATGTTCACCGCCAATGTCATCCTCTCGCTGGTGACGGTAATTTCTGTCTTCGTGGGCTTTATCCTGATTATGTTTAT
CGGTATGCGGGCCCAAGGCTTCTTCAAGGCCCAACAAGTCAACTTGGCGGCCGTCAATGGCTTCGTCGAGGAAACTTATT
CGGGCCACAATGTGGTCACCAGCTACAATGCCGTACCTGAGTCTCTGGCCCAGTTCGCCAAACTCAATGGTCAACTCCAT
GACAGCATCTGGAAGTCTCAATTTATCTCGGGCATTATGATGCCGCTTATGATTTTCATTGGCAATTTCGCCTACGTCCT
AGTCATTATTGTTGGGGCTATCTTGGCCTTGCAAGAGGGCAGTGGCGTGACCATGGGGACCATCGTGGCCTTTATGGTCT
ATGTGCGAATCTTCGCCCAACCCATTTCCCAACTGGCCCAAGGCATGACTTCCCTGCAACAAGCGGGAGCAGCCATGAGT
CGGGTCTCCGAATTCCTCAATGAAGAAGAAATGGCGGATGACCACGACTTGCCACAGGCCTTGACCGACATTAAGGGGCA
GGTCACCTTCGACCAGGTCACCTTCGGTTATTCGCCTGATAAGACCATCATTAATGACTTTACGGCCCAAGCCCGTCCTG
GTAAGAAGATTGCCATTGTAGGGCCGACCGGGGCAGGTAAGACGACCATTGTTAACCTGCTTATGAAGTTCTATGAAATC
AACCAGGGGACCATCGCCATTGATGGCGTAGACCTGGCCCAAATGAAGCGGTCGGAAGTCCATGATGCCTTCGCCATGGT
CCTGCAGGATACCTGGCTCTTTGAAGGGACCATCAAGGAAAACCTCATCTTCAACCAGACTGGCATTAGTGACGACCAAG
TGATCGAGGCGGCCAAGGCGGCTGGCGTCCACCACTATATTATGACCCTGCCTAAGGGCTACGACACGGTCCTGGATGAC
ACGGTCACCTTGTCGGTCGGGCAAAAGCAGCTCATGACCATTGCCCGCGCCTTGCTTAAGGACGCTCCACTGCTGATCTT
GGACGAGGCCACTTCTTCGGTGGATACCCGGACCGAAGAACTGATTCAACAGGCCATGGATACCCTCATGGAGGGGCGGA
CTTCCTTCGTCATCGCCCACCGTCTGTCGACTATTAAAAATGCCGACTATATCCTGGTCATGCAGGAAGGTCGTATTATC
GAACAAGGCAACCACCAGGAGCTCATGGCTCAAGGCGGCTTCTATGCGGACCTCTATAACAGCCAGTTCGATAAGAATTC
TAGTGGCATGGACTTCGAAGAACTCTTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(365-512)

ABC transporter transmembrane region (ABC_membrane)

(26-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W1Q3A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

65.009

97.655

0.635