Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOC79_RS06990 Genome accession   NZ_CP053988
Coordinates   1517232..1519001 (+) Length   589 a.a.
NCBI ID   WP_023391714.1    Uniprot ID   -
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512232..1524001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS06975 (FOC79_06975) - 1514907..1515671 (-) 765 WP_023391711.1 ABC transporter permease -
  FOC79_RS06980 (FOC79_06980) - 1515655..1516593 (-) 939 WP_035364138.1 ATP-binding cassette domain-containing protein -
  FOC79_RS06985 (FOC79_06985) - 1516784..1517239 (+) 456 WP_035364140.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC79_RS06990 (FOC79_06990) rcrP 1517232..1519001 (+) 1770 WP_023391714.1 ABC transporter ATP-binding protein Regulator
  FOC79_RS06995 (FOC79_06995) rcrQ 1518991..1520784 (+) 1794 WP_023391715.1 ABC transporter ATP-binding protein Regulator
  FOC79_RS07000 (FOC79_07000) - 1520847..1521725 (-) 879 WP_035364142.1 YitT family protein -
  FOC79_RS07005 (FOC79_07005) - 1521864..1522415 (+) 552 WP_023391717.1 hypothetical protein -
  FOC79_RS07010 (FOC79_07010) - 1522446..1523030 (+) 585 WP_023391718.1 NAD(P)H-dependent oxidoreductase -
  FOC79_RS07015 (FOC79_07015) - 1523051..1523569 (+) 519 WP_023391719.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64901.50 Da        Isoelectric Point: 5.4087

>NTDB_id=449754 FOC79_RS06990 WP_023391714.1 1517232..1519001(+) (rcrP) [Abiotrophia defectiva strain FDAARGOS_785]
MFKLIKRLSAREWGMVGLTVAFIFLAVYLDLEVPSYMKEVATLLQTPGVGLDQLMGPGALMLGLSLASFASLVMVGYLSA
RLAARYTTRLRSDIYSQVLSYSDAEIKRFSIPSLLTRTTNDISQIQLLITMGLQVIVRGPIMAIWAMTKIVGKSEAWLWA
VGVAVLINILMTVVLMTLAFPKQAVIQKLTDKLNAVTRESLMGIRVIRAYNAEDYQDAKFEATNNEVTRLNLFVNNLMAI
FNPIMSGISSGLTLAIYWIGAYLIASANLFDKVGLFSDMIVFMSYAMQIVIGFLLMGIIFFILPRSLVAAGRINEVLELE
PSIHSPAQGQSPDPSLKGQVTFQNVTFRYAQEAEPVIQDVSFQAQAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGQILV
DGVNVADYDLSELRKRVGYIPQKAVLFSGDIQSNLDMGDSLESPLTEAKMWQALELAQAKDFVEAKEGGLAEHVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILREALTKETAHMTKLIVAQRISTIMEADLILVLDQGRVVGQG
THKELLKDNAVYREIAYSQLSKEELEDGQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=449754 FOC79_RS06990 WP_023391714.1 1517232..1519001(+) (rcrP) [Abiotrophia defectiva strain FDAARGOS_785]
ATGTTTAAATTAATTAAGCGACTCAGCGCCCGCGAATGGGGCATGGTGGGTCTTACCGTGGCCTTCATCTTCCTAGCCGT
CTACTTGGACTTAGAAGTTCCAAGTTATATGAAGGAAGTGGCCACCCTCTTACAAACACCTGGCGTGGGCCTAGACCAGT
TAATGGGCCCTGGCGCCCTCATGTTAGGCCTATCCCTGGCTAGTTTTGCTAGCCTAGTCATGGTGGGTTACCTATCTGCC
CGCTTGGCTGCTAGATATACCACCCGTTTGCGATCGGACATCTATAGCCAAGTGCTTAGCTATTCGGATGCTGAAATCAA
ACGCTTCAGCATTCCCTCCCTCTTGACCCGGACCACTAATGACATCAGCCAGATTCAGCTGCTGATTACCATGGGCCTCC
AAGTCATTGTCCGCGGTCCCATTATGGCTATTTGGGCCATGACCAAGATTGTGGGCAAGTCTGAGGCCTGGCTGTGGGCA
GTGGGGGTAGCGGTCTTAATCAACATTTTAATGACCGTAGTCCTCATGACCTTGGCCTTTCCTAAGCAAGCAGTTATACA
GAAATTAACCGATAAGCTCAATGCCGTTACCCGCGAGAGCCTGATGGGGATTCGGGTCATTCGGGCCTATAATGCTGAGG
ACTACCAAGATGCCAAGTTCGAAGCCACTAACAATGAAGTGACCCGACTCAACCTCTTCGTTAACAACCTCATGGCCATC
TTCAACCCTATCATGTCGGGGATTTCCTCTGGTTTGACCCTGGCCATCTATTGGATTGGGGCCTACCTGATTGCTTCCGC
TAACTTATTTGATAAAGTTGGCCTCTTCAGCGACATGATTGTCTTCATGTCCTATGCTATGCAGATTGTCATCGGCTTCC
TCTTAATGGGGATTATCTTCTTCATCCTGCCCCGTAGCTTGGTGGCAGCGGGCCGGATCAATGAAGTTCTAGAATTGGAG
CCAAGTATTCATTCACCAGCCCAAGGCCAGTCTCCAGACCCAAGTCTTAAGGGGCAAGTCACCTTCCAAAATGTGACCTT
CCGCTATGCCCAAGAAGCCGAGCCGGTCATCCAAGATGTATCCTTCCAGGCCCAAGCTGGCCAAACCGTGGCCTTTATCG
GCTCAACCGGTTCAGGTAAATCCACCCTGGTTAACCTGATTCCGCGCTTCTATGATGTGTCAGAAGGCCAGATTCTGGTC
GACGGCGTCAACGTGGCTGACTACGACTTAAGCGAACTGCGCAAGCGAGTAGGCTATATTCCCCAAAAGGCCGTCCTCTT
CTCAGGCGACATCCAGTCCAACCTGGACATGGGGGATAGCTTAGAAAGCCCACTGACGGAAGCCAAGATGTGGCAGGCCC
TTGAATTGGCCCAAGCTAAGGACTTTGTGGAGGCCAAGGAAGGCGGCCTAGCCGAGCATGTGGCCCAAGGCGGGACCAAC
TTCTCAGGGGGTCAACGTCAACGTCTGGCCATTGCCCGGGCGCTAGCGCGTAAGCCAGAAATCTTGATCTTCGACGATTC
CTTCTCAGCCCTAGACTATAAGACCGACCGCATCTTGCGTGAGGCTTTGACCAAGGAGACAGCCCACATGACCAAGTTGA
TTGTGGCCCAACGGATTTCCACCATTATGGAGGCTGACTTGATTCTGGTCCTAGACCAAGGTCGGGTGGTCGGCCAAGGG
ACCCACAAGGAATTGCTCAAAGACAATGCAGTCTATCGCGAAATTGCTTACTCTCAATTATCCAAGGAGGAATTAGAAGA
TGGCCAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-289)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

63.894

100

0.652