Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC79_RS04205 Genome accession   NZ_CP053988
Coordinates   913760..915148 (+) Length   462 a.a.
NCBI ID   WP_023392553.1    Uniprot ID   W1Q1B6
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908760..920148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS04190 (FOC79_04190) - 910166..911623 (-) 1458 WP_023392558.1 alpha-amylase -
  FOC79_RS04195 (FOC79_04195) - 911810..912922 (-) 1113 WP_172863469.1 ABC transporter ATP-binding protein -
  FOC79_RS04200 (FOC79_04200) - 913157..913723 (+) 567 WP_023392554.1 dUTP diphosphatase -
  FOC79_RS04205 (FOC79_04205) radA 913760..915148 (+) 1389 WP_023392553.1 DNA repair protein RadA Machinery gene
  FOC79_RS04210 (FOC79_04210) - 915188..916306 (+) 1119 WP_023392552.1 PIN/TRAM domain-containing protein -
  FOC79_RS04215 (FOC79_04215) gltX 916323..917795 (+) 1473 WP_023392551.1 glutamate--tRNA ligase -
  FOC79_RS04220 (FOC79_04220) - 917888..918634 (+) 747 WP_023392550.1 DUF4336 domain-containing protein -
  FOC79_RS04225 (FOC79_04225) - 918646..919299 (+) 654 WP_023392549.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50817.43 Da        Isoelectric Point: 6.5912

>NTDB_id=449752 FOC79_RS04205 WP_023392553.1 913760..915148(+) (radA) [Abiotrophia defectiva strain FDAARGOS_785]
MAKKKVSYECMACGYESAKYLGKCPNCGAWNQMEEQIVQSTIKTEKSQFKVLTQRGEDANRAQRLEEITYKAETRTHTNF
QEFDRVLGGGVVAGSLVLIGGDPGIGKSTLLLQVSIQLANLGQTVLYVSGEESLSQIKMRAERLSLKDSHFYLLSETDLA
VIAGEVQRIAPDILIIDSIQTMQLADHTGVAGSVSQLREATAILMRIAKDNNIATFIVGHVTKEGNIAGPRMLEHMVDTV
LYFEGERHNRFRVLRAVKNRFGSTHELGVFEMLEAGLEEVTNPSELFLEERLAGATGSTVVASIEGTRPILAEIQSLMTP
TVYGTAKRTSSGIDYQRVSLLLAVMEKHCGLLVQNQDAFFKITGGVKLDEPAIDLAIAVSIASSYWNQATNIEDCFIGEI
GLTGEIRRVSQIKERLKEAAKLGFKRAYIPKNNLAGLDQKLAIEIVPVATIQEAIHKVFPRQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=449752 FOC79_RS04205 WP_023392553.1 913760..915148(+) (radA) [Abiotrophia defectiva strain FDAARGOS_785]
ATGGCCAAGAAAAAAGTAAGCTACGAATGTATGGCCTGTGGCTATGAATCGGCCAAGTATCTGGGCAAGTGCCCTAATTG
TGGCGCTTGGAATCAGATGGAAGAGCAGATTGTCCAATCGACTATCAAGACCGAGAAAAGTCAGTTCAAGGTTTTGACCC
AGCGCGGTGAAGACGCCAACCGGGCTCAACGCCTAGAAGAAATCACCTACAAGGCTGAAACGCGGACCCATACCAATTTC
CAAGAGTTCGACCGGGTCTTGGGTGGCGGAGTGGTAGCTGGCAGTCTAGTTCTGATTGGGGGCGACCCTGGGATTGGTAA
GTCTACCCTCTTGCTCCAAGTCTCGATTCAACTGGCCAACCTAGGTCAAACCGTCCTTTATGTTTCCGGGGAAGAAAGTC
TCTCCCAGATTAAGATGCGGGCGGAACGCCTGTCGCTCAAGGACAGTCATTTCTACCTCTTGTCGGAGACGGATTTGGCA
GTTATTGCTGGTGAAGTTCAGCGCATTGCACCAGATATTTTGATTATTGACTCTATCCAGACCATGCAACTGGCAGATCA
TACTGGGGTGGCGGGAAGTGTTTCCCAATTGCGGGAAGCCACCGCTATCTTAATGCGGATTGCCAAGGATAATAATATTG
CAACCTTTATTGTTGGTCACGTGACCAAGGAGGGCAATATTGCGGGGCCTCGAATGTTGGAACACATGGTGGATACCGTG
CTCTACTTTGAGGGGGAACGTCATAATCGTTTTCGGGTCTTGCGAGCCGTGAAAAACCGCTTTGGTTCCACGCATGAGCT
AGGTGTTTTCGAAATGCTGGAAGCAGGCTTGGAAGAAGTAACCAACCCCTCGGAGCTCTTCTTGGAAGAGCGTTTGGCTG
GTGCGACGGGTTCGACTGTTGTGGCTTCCATTGAAGGAACGCGACCAATTTTGGCGGAAATCCAGTCTCTGATGACTCCA
ACTGTCTATGGGACGGCCAAACGTACTTCGTCGGGGATTGACTATCAACGCGTGTCACTGCTCTTGGCAGTTATGGAAAA
GCATTGCGGTCTGTTGGTGCAAAATCAGGATGCTTTCTTCAAGATTACAGGTGGTGTTAAATTAGATGAGCCGGCCATTG
ACTTGGCCATTGCCGTCAGCATCGCGTCTAGTTATTGGAATCAGGCCACCAATATCGAAGATTGCTTTATCGGCGAAATT
GGTCTGACGGGAGAAATCCGGCGGGTTAGCCAAATCAAAGAGCGCCTCAAGGAAGCTGCCAAACTTGGCTTTAAGCGGGC
CTATATTCCAAAAAATAATCTAGCAGGCCTGGATCAGAAGCTGGCAATTGAGATTGTGCCAGTGGCTACTATCCAGGAAG
CCATTCATAAGGTCTTCCCCCGCCAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-225)

Subunit ChlI of Mg-chelatase (ChlI)

(371-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W1Q1B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

62.527

99.351

0.621
  radA Streptococcus mitis NCTC 12261

62.527

99.351

0.621
  radA Streptococcus pneumoniae Rx1

62.527

99.351

0.621
  radA Streptococcus pneumoniae D39

62.527

99.351

0.621
  radA Streptococcus pneumoniae R6

62.527

99.351

0.621
  radA Streptococcus pneumoniae TIGR4

62.527

99.351

0.621
  radA Bacillus subtilis subsp. subtilis str. 168

58.991

98.701

0.582