Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOC79_RS02310 Genome accession   NZ_CP053988
Coordinates   519265..521076 (-) Length   603 a.a.
NCBI ID   WP_023391231.1    Uniprot ID   -
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 514265..526076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS02290 (FOC79_02290) - 514914..516107 (-) 1194 WP_035363957.1 pyridoxal phosphate-dependent aminotransferase -
  FOC79_RS02295 (FOC79_02295) - 516130..517167 (-) 1038 WP_023391228.1 glycosyltransferase family 2 protein -
  FOC79_RS02300 (FOC79_02300) - 517172..518401 (-) 1230 WP_023391229.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  FOC79_RS02305 (FOC79_02305) - 518415..519107 (-) 693 WP_023391230.1 sugar transferase -
  FOC79_RS02310 (FOC79_02310) pepF 519265..521076 (-) 1812 WP_023391231.1 oligoendopeptidase F Regulator
  FOC79_RS02315 (FOC79_02315) - 521219..522325 (-) 1107 WP_023391232.1 competence protein CoiA -
  FOC79_RS02320 (FOC79_02320) rhaD 522476..523276 (-) 801 WP_023391233.1 rhamnulose-1-phosphate aldolase -
  FOC79_RS02325 (FOC79_02325) - 523280..524632 (-) 1353 WP_023391234.1 PTS galactitol transporter subunit IIC -
  FOC79_RS02330 (FOC79_02330) - 524683..524961 (-) 279 WP_023391235.1 PTS sugar transporter subunit IIB -
  FOC79_RS02335 (FOC79_02335) - 524977..525438 (-) 462 WP_023391236.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68902.21 Da        Isoelectric Point: 4.6040

>NTDB_id=449744 FOC79_RS02310 WP_023391231.1 519265..521076(-) (pepF) [Abiotrophia defectiva strain FDAARGOS_785]
MSEETLRTREQQLEAFTWDLTSLYADADQWQAEYDKAEAMVADLASFKGTLDQGGAHLVTVIEAIQAACLVVERLYAYAH
LTYDQDSTNSAAQVLNARAMQLYSKLAEAIAFFDPELLSLPSETLEAYFQETPELDFYRQYLDDITRGRAHTLSASEETL
LAQLGEIFNSPYSTFSLLDNADFVFPTIEGPEGQAVQLTHGTYGRLLESTDRRVRRDTFQQYYTVYNQFKNTLANVLSTN
IKTDNYKAKVRHYPSARAAALFRNNVPESVYDTLLETVGDHLGLLHRYTALRKDLLGLDSLEMYDLYTPLLGDAPIKFSQ
AEARDIVMEALAPMGPDYLEIMAKAFDERWIDWYENKGKRSGAYSGGMYDSKPYVLLNWQDNINWLFTLVHELGHSAHSY
LSRTNQPYVYSDYSIFLAEIASTTNENLLTDYLLKKYQDPQIRLYVLNHFLDGVKGTVFRQTQFAEFEHFMHQADAEGTP
LTHEFLTENYRKLNAKYYGPSVNSDSEIGLEWARIPHFYYNYYVFQYATGFSAATFFADKIASGDSALLEAYKGFLKSGC
SLYPIDTMKKAGLDMTQRDYIEATLKVFEARLNEFEALLAETK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=449744 FOC79_RS02310 WP_023391231.1 519265..521076(-) (pepF) [Abiotrophia defectiva strain FDAARGOS_785]
ATGTCAGAAGAAACATTACGTACGCGTGAACAACAACTGGAAGCCTTTACTTGGGACCTGACTTCGCTCTATGCGGATGC
AGACCAGTGGCAGGCTGAGTATGACAAGGCAGAAGCCATGGTGGCGGACTTAGCATCCTTCAAGGGCACCCTGGATCAAG
GTGGCGCCCACTTAGTGACCGTTATTGAGGCTATTCAAGCGGCTTGCTTAGTTGTTGAGCGTCTCTATGCTTATGCCCAC
TTGACCTACGATCAAGATTCAACCAATAGTGCTGCTCAAGTTCTTAATGCTCGAGCGATGCAACTTTACAGCAAGTTGGC
AGAAGCCATTGCCTTCTTCGATCCTGAACTTTTGAGCTTGCCATCCGAAACGCTGGAAGCTTACTTCCAAGAAACACCTG
AATTAGATTTCTATCGTCAGTACTTGGATGATATTACCCGTGGGCGTGCCCACACCTTGTCGGCTTCCGAGGAGACGCTC
CTAGCGCAGTTGGGCGAGATTTTTAATAGCCCTTATTCTACTTTCTCCTTGTTGGACAATGCTGACTTTGTCTTCCCAAC
CATTGAGGGACCAGAAGGGCAAGCAGTACAATTAACACACGGGACCTATGGTCGTCTCTTGGAAAGCACTGACCGCCGTG
TGCGCCGCGATACTTTCCAACAGTACTATACTGTCTACAACCAGTTCAAGAATACCTTGGCCAATGTCTTATCTACCAAT
ATTAAGACTGACAACTACAAGGCCAAAGTCCGTCACTATCCGTCTGCACGGGCCGCAGCCCTCTTCCGCAATAATGTACC
GGAATCTGTCTACGACACCTTATTAGAGACGGTAGGCGATCACCTGGGCTTACTCCATCGTTATACCGCCTTGCGTAAGG
ACCTCTTGGGTCTAGACTCACTCGAAATGTATGACCTTTATACGCCACTCCTTGGGGATGCCCCAATCAAGTTCAGCCAG
GCGGAAGCGCGGGATATCGTGATGGAAGCTTTAGCGCCAATGGGACCAGATTATTTGGAAATCATGGCCAAGGCCTTCGA
TGAACGCTGGATTGACTGGTATGAAAACAAGGGCAAACGCTCAGGCGCTTACTCAGGTGGGATGTATGACAGCAAGCCTT
ATGTCCTACTCAACTGGCAAGACAATATCAATTGGCTCTTCACCTTGGTTCATGAGTTGGGTCACAGTGCGCACTCTTAC
TTGTCTCGCACTAACCAACCTTATGTTTACAGTGATTATTCGATTTTCTTGGCTGAGATTGCCTCAACTACTAATGAAAA
TCTCTTGACGGACTACCTCTTGAAGAAATATCAAGATCCTCAAATCCGTCTCTATGTCCTCAACCACTTCTTGGATGGGG
TTAAGGGAACGGTCTTCCGTCAAACCCAATTTGCGGAATTCGAGCACTTCATGCATCAAGCAGATGCGGAAGGAACCCCA
TTAACTCACGAGTTCTTGACGGAGAACTATCGCAAATTGAATGCTAAGTACTACGGACCAAGCGTTAACTCTGACTCTGA
AATTGGGCTAGAGTGGGCACGGATTCCACACTTCTATTACAACTACTATGTCTTCCAATATGCGACTGGTTTCTCCGCAG
CCACCTTCTTCGCAGACAAGATTGCATCTGGCGACAGTGCTTTACTTGAAGCCTACAAGGGCTTCCTAAAGTCAGGCTGC
AGCCTCTATCCAATCGACACCATGAAGAAGGCAGGGTTGGATATGACGCAACGTGACTATATCGAAGCAACACTCAAGGT
CTTCGAAGCACGCTTGAACGAGTTTGAAGCCCTCTTGGCAGAAACTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.829

97.181

0.484