Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC80_RS16070 Genome accession   NZ_CP053987
Coordinates   3400877..3402238 (+) Length   453 a.a.
NCBI ID   WP_062683806.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3395877..3407238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC80_RS16050 (FOC80_16050) hpaE 3396887..3398353 (+) 1467 WP_062683802.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  FOC80_RS16055 (FOC80_16055) hpaD 3398390..3399241 (+) 852 WP_062683803.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  FOC80_RS16060 (FOC80_16060) hpaR 3399242..3399706 (-) 465 WP_062683804.1 homoprotocatechuate degradation operon regulator HpaR -
  FOC80_RS16065 (FOC80_16065) - 3399813..3400448 (-) 636 WP_062683805.1 hypothetical protein -
  FOC80_RS16070 (FOC80_16070) radA 3400877..3402238 (+) 1362 WP_062683806.1 DNA repair protein RadA Machinery gene
  FOC80_RS16075 (FOC80_16075) - 3402327..3403106 (+) 780 WP_062683807.1 sulfite exporter TauE/SafE family protein -
  FOC80_RS16080 (FOC80_16080) - 3403277..3403510 (+) 234 WP_062683808.1 hypothetical protein -
  FOC80_RS16085 (FOC80_16085) - 3403643..3404605 (-) 963 WP_062683809.1 2-hydroxyacid dehydrogenase -
  FOC80_RS16090 (FOC80_16090) - 3404708..3405691 (-) 984 WP_062683810.1 tripartite tricarboxylate transporter substrate binding protein -
  FOC80_RS16095 (FOC80_16095) - 3405768..3406775 (-) 1008 WP_062683837.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48151.22 Da        Isoelectric Point: 7.1756

>NTDB_id=449727 FOC80_RS16070 WP_062683806.1 3400877..3402238(+) (radA) [Achromobacter denitrificans strain FDAARGOS_786]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETLESSSPAAASHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSTTTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=449727 FOC80_RS16070 WP_062683806.1 3400877..3402238(+) (radA) [Achromobacter denitrificans strain FDAARGOS_786]
ATGGCCAAATCCCGAACCGTATACGTCTGCGCCGATTGCGGCGGCACTACCCCGAAGTGGCAGGGCAAATGCCCTCACTG
CAACGCCTGGAACACGCTGGAAGAAACCCTGGAGTCCTCGTCCCCGGCCGCGGCCTCGCACCGCTACGCGCCGCTGGCGT
CGAGCAGCCCGGTGCGCAGCCTGTCGGAGATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGGCTGGACGAGTTCGAT
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTCGTGCTGATCGGCGGGGATCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAGGCGCTGGCGTCCCTGTCGACCACCACCAACGTGCTGTACGTCACGGGCGAGGAATCCGCCGAGCAGGTGGCGC
TGCGCGCGCGGCGCCTGGGCCTGCAGACCGGCAACGTCAACCTGCTGGCCGAAATCCGGCTGGAGGCCATCCAGGCCGCG
GTGTCCGAGCAGAAGCCCACCGTGGCCGTCATCGACTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCGGCGCCGGG
CTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTCGATACCGTGCTGTATTTCGAAGGG
GACACGCATTCCTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGCGAT
GACGGACCGGGGGCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCAGGATCCT
GCGTCATGGCCACGCAGGAAGGCACCCGTCCGCTGCTGGTGGAAATCCAGGCGCTGGTCGATACCTCGCACGCGCCCAAC
CCGCGCCGGCTGACGGTGGGGCTGGAAGGCAACCGGCTGGCGATGCTGCTGGCCGTGCTGCACCGGCATGCGGGCGTGTC
CACCTTCGACCAGGACGTCTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCCGACCTGCCGGTGCTCC
TGGCCATCATGTCCTCGTTGCGCGACAAGCCGCTGCCGCGCGGGCTGATCGCGTTCGGCGAAGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTTCGATCGCCCTGATCCCCAAGGC
CAACGCGCCGCGCCAGCCGATCGAGGGGCTGGAGATCTGGGCCGTGGACCGGCTGGACGCCGCGCTGGACAAACTGCGTT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.503
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus mitis SK321

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455