Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOC80_RS08785 Genome accession   NZ_CP053987
Coordinates   1877763..1878839 (+) Length   358 a.a.
NCBI ID   WP_115599022.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_786     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872763..1883839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC80_RS08760 (FOC80_08760) - 1874285..1874668 (+) 384 WP_062683087.1 MOSC N-terminal beta barrel domain-containing protein -
  FOC80_RS08765 (FOC80_08765) - 1874715..1875935 (-) 1221 WP_062683088.1 benzoate/H(+) symporter BenE family transporter -
  FOC80_RS08770 (FOC80_08770) - 1875932..1876183 (-) 252 WP_062683089.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FOC80_RS08775 (FOC80_08775) coaD 1876303..1876806 (-) 504 WP_013396175.1 pantetheine-phosphate adenylyltransferase -
  FOC80_RS08780 (FOC80_08780) rsmD 1876865..1877431 (-) 567 WP_062683090.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC80_RS08785 (FOC80_08785) pilA 1877763..1878839 (+) 1077 WP_115599022.1 signal recognition particle-docking protein FtsY Machinery gene
  FOC80_RS08790 (FOC80_08790) - 1878925..1880583 (-) 1659 WP_062683091.1 CYTH and CHAD domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37120.83 Da        Isoelectric Point: 6.8945

>NTDB_id=449724 FOC80_RS08785 WP_115599022.1 1877763..1878839(+) (pilA) [Achromobacter denitrificans strain FDAARGOS_786]
MPVAPAVAPPAAAPAPAAEAVREPVVPPAAPPAPAAIPAAVAPEPVPAPVAEAPKKASWLSRLKQGLSRTGQSIGGIFVG
VKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERDFDLKRAQPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDAVNAGRARGMGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLSD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=449724 FOC80_RS08785 WP_115599022.1 1877763..1878839(+) (pilA) [Achromobacter denitrificans strain FDAARGOS_786]
ATTCCGGTTGCGCCGGCAGTCGCGCCGCCCGCAGCTGCGCCCGCCCCCGCCGCGGAGGCGGTTCGCGAGCCCGTCGTTCC
GCCCGCCGCGCCGCCGGCGCCTGCCGCGATTCCCGCGGCCGTGGCGCCCGAGCCCGTTCCCGCGCCCGTCGCCGAGGCGC
CCAAGAAGGCGTCCTGGCTGTCGAGGCTGAAGCAGGGCCTGTCGCGCACCGGCCAAAGCATTGGCGGCATTTTCGTCGGC
GTCAAGGTCGACGAGAACCTGTTCGAGGAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCCTGGAGGCCACCGAGAA
GCTGCTGACCGCGCTGCGCGCCCGGGTCAAGAAGGAGCGCATCGAAGACCCGGCCAAGGTGAAGACCGCCCTGCGCCAAC
TGCTCGCCGACCACCTGCGTCCGCTGGAGCGCGATTTCGACCTCAAGCGCGCGCAGCCGCTGGTCGTCATGATCGCGGGC
GTCAACGGGGCGGGCAAGACCACCTCCATCGGCAAGCTGGCGCACACGTTCCAGCGCCAGGGGGCCAGCGTGCTGCTGGC
GGCGGGCGACACTTTCCGGGCGGCCGCCCGCGAGCAGCTCGTCGAATGGGGCAGCCGCAACAACGTTACGGTGATTTCCC
AGGACGGCGGCGATCCGGCGGCGGTGGCGTTCGACGCCGTCAACGCGGGGCGCGCGCGCGGCATGGGCGTGGTGATGGTA
GATACCGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAACTCAAGAAGATCCGCCGCGTGATCGGCAAGGCGGA
TGCCGCGGCGCCTCACGAGGTGCTGCTGGTGGTCGACGGCAATACCGGGCAGAACGCCCTGGCGCAGATCCGCGCCTTCG
ATGCGGCCATCAATCTGACGGGCCTGGTCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGAACGCTGGCGGCGGTGGCC
GCGGGCAGCCAGGGCGTGCGCCCGATCCCGGTGTACTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGT
GGCCGACGAGTTCGCAGGGGCCTTGCTGTCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(154-356)

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.501

99.721

0.534