Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC84_RS25050 Genome accession   NZ_CP053985
Coordinates   5270981..5272342 (+) Length   453 a.a.
NCBI ID   WP_173147017.1    Uniprot ID   A0A7D4IPC8
Organism   Achromobacter pestifer strain FDAARGOS_790     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5265981..5277342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC84_RS25030 (FOC84_25030) hpaE 5267024..5268490 (+) 1467 WP_173147011.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  FOC84_RS25035 (FOC84_25035) hpaD 5268528..5269379 (+) 852 WP_173147013.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  FOC84_RS25040 (FOC84_25040) hpaR 5269380..5269844 (-) 465 WP_088141388.1 homoprotocatechuate degradation operon regulator HpaR -
  FOC84_RS25045 (FOC84_25045) - 5269943..5270557 (-) 615 WP_173147014.1 hypothetical protein -
  FOC84_RS25050 (FOC84_25050) radA 5270981..5272342 (+) 1362 WP_173147017.1 DNA repair protein RadA Machinery gene
  FOC84_RS25055 (FOC84_25055) - 5272427..5273206 (+) 780 WP_173147020.1 sulfite exporter TauE/SafE family protein -
  FOC84_RS25060 (FOC84_25060) - 5273385..5273624 (+) 240 WP_173147023.1 hypothetical protein -
  FOC84_RS25065 (FOC84_25065) - 5273762..5274718 (-) 957 WP_173147025.1 2-hydroxyacid dehydrogenase -
  FOC84_RS25070 (FOC84_25070) - 5274823..5275809 (-) 987 WP_173147028.1 tripartite tricarboxylate transporter substrate binding protein -
  FOC84_RS25075 (FOC84_25075) - 5275884..5276897 (-) 1014 WP_173147031.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48131.19 Da        Isoelectric Point: 6.7633

>NTDB_id=449703 FOC84_RS25050 WP_173147017.1 5270981..5272342(+) (radA) [Achromobacter pestifer strain FDAARGOS_790]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLAAASPVRSLSEIEARETPRQPTGLEEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSEVTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLESIQAA
VSEQQPTVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALEKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=449703 FOC84_RS25050 WP_173147017.1 5270981..5272342(+) (radA) [Achromobacter pestifer strain FDAARGOS_790]
ATGGCCAAATCCCGAACCGTATACGTGTGCGCCGATTGCGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTGGAGTCGTCGGCGCCGGCCGCCGCCTCCCACCGTTACGCGCCGCTGGCGG
CCGCCAGCCCGGTGCGCAGCCTGTCTGAAATCGAAGCCCGTGAAACGCCGCGCCAGCCTACCGGGCTGGAAGAGTTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCGGGCATAGGCAAGTCCACCTTGCT
GTTGCAGGCGCTGGCGTCGCTGTCCGAAGTCACCAATGTGCTGTACGTCACGGGCGAGGAATCCGCCGAGCAGGTGGCCC
TGCGCGCGCGCCGCCTGGGCCTGCAGACGGGCAACGTCAACCTGCTGGCCGAGATCCGGCTGGAGTCGATCCAGGCGGCG
GTGTCGGAGCAACAGCCCACCGTTGCCGTGATCGACTCGATCCAGACACTGTATAGCGGCGAGCTGAGCGCCGCGCCGGG
TTCGGTCTCGCAGGTGCGCGAATGCGCGGCGCAGCTTACGCGCCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGGGCGCTGGCCGGGCCGCGGGTGCTGGAGCACATCGTGGACACCGTGCTGTATTTCGAGGGC
GATACGCATTCTTCGTTCCGCCTGGTGCGCGCTTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTCTTCGCCAT
GACGGACCGCGGGCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAACAGCAGGTCGCTGGATCCT
GCGTGATGGCCACGCAGGAAGGTACTCGCCCGTTGCTGGTGGAGATCCAGGCGCTGGTGGATAGTTCGCACGCGCCCAAC
CCGCGCCGGCTGACGGTGGGTCTGGAAGGCAACCGCCTGGCGATGCTGCTGGCCGTGCTGCACCGGCACGCCGGCGTGTC
CACCTTCGACCAGGACGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAACCCGCGGCCGACCTGCCGGTGTTGC
TGGCCATCATGTCCTCGCTGCGCGACAAGCCGCTGCCGCGCGGCCTGATCGCCTTCGGCGAAGTCGGCCTCGCGGGTGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGCTTTTCCATTGCCCTGATCCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAAGGACTGGAGATCTGGGCGGTGGACCGGCTGGATGCCGCGCTGGAAAAGTTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4IPC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.503
  radA Streptococcus mitis SK321

47.797

100

0.479
  radA Streptococcus mitis NCTC 12261

47.461

100

0.475
  radA Streptococcus pneumoniae TIGR4

49.765

94.04

0.468
  radA Streptococcus pneumoniae R6

49.765

94.04

0.468
  radA Streptococcus pneumoniae Rx1

49.765

94.04

0.468
  radA Streptococcus pneumoniae D39

49.765

94.04

0.468