Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOC84_RS17985 Genome accession   NZ_CP053985
Coordinates   3760869..3761918 (+) Length   349 a.a.
NCBI ID   WP_367949473.1    Uniprot ID   -
Organism   Achromobacter pestifer strain FDAARGOS_790     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3755869..3766918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC84_RS17960 (FOC84_17960) - 3757379..3757765 (+) 387 WP_173145620.1 MOSC N-terminal beta barrel domain-containing protein -
  FOC84_RS17965 (FOC84_17965) - 3757788..3759011 (-) 1224 WP_173145621.1 benzoate/H(+) symporter BenE family transporter -
  FOC84_RS17970 (FOC84_17970) - 3759008..3759259 (-) 252 WP_173145622.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FOC84_RS17975 (FOC84_17975) coaD 3759385..3759888 (-) 504 WP_173145623.1 pantetheine-phosphate adenylyltransferase -
  FOC84_RS17980 (FOC84_17980) rsmD 3759947..3760513 (-) 567 WP_173145624.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC84_RS17985 (FOC84_17985) pilA 3760869..3761918 (+) 1050 WP_367949473.1 signal recognition particle-docking protein FtsY Machinery gene
  FOC84_RS17990 (FOC84_17990) - 3761997..3763655 (-) 1659 WP_173145626.1 CYTH and CHAD domain-containing protein -
  FOC84_RS33555 (FOC84_17995) - 3763997..3764083 (+) 87 Protein_3461 ESPR domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 36161.76 Da        Isoelectric Point: 8.5379

>NTDB_id=449701 FOC84_RS17985 WP_367949473.1 3760869..3761918(+) (pilA) [Achromobacter pestifer strain FDAARGOS_790]
MAPAPVAAPAPLAPTPTPPSAPAPVAAPVAAPAPVAAVEPAAEAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFE
ELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRTQPLVVMIAGVNGAGKTTS
IGKLAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQEGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ
LHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPI
PVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=449701 FOC84_RS17985 WP_367949473.1 3760869..3761918(+) (pilA) [Achromobacter pestifer strain FDAARGOS_790]
GTGGCTCCGGCGCCCGTCGCGGCTCCCGCGCCGTTGGCACCCACTCCCACGCCGCCCTCTGCTCCCGCTCCGGTTGCGGC
TCCGGTGGCGGCGCCGGCTCCCGTGGCTGCCGTCGAGCCTGCCGCCGAAGCCCCCAAGAAGGCTTCCTGGCTGTCCCGCC
TGAAGCAAGGCCTGTCGCGCACGGGCCAGAGCATAGGCGGCATCTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAG
GAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCCTGGAGGCCACCGAAAAGCTCCTGACCGCGCTGCGCGCCCGCGT
AAAGAAGGAACGCATCGAGGATCCGGCCAAGGTGAAGGCGGCCTTGCGCCAACTGCTGGCCGATCACCTGCGCCCGCTGG
AGCGCGCCTTCGACCTGAAGCGCACGCAGCCCCTGGTCGTCATGATCGCTGGCGTCAACGGCGCCGGCAAGACCACGTCC
ATCGGCAAGCTGGCCCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCTGCCGGCGACACGTTCCGCGCGGCCGC
GCGCGAGCAGCTCATCGAATGGGGCAGCCGCAACAACGTGACCGTGATTTCGCAGGAAGGCGGGGATCCGGCGGCGGTGG
CGTTCGACGCCGTCAACGCGGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGATACCGCGGGCCGCCTGCCCACGCAA
TTGCACCTGATGGAAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCGGATGCCGCCGCGCCGCACGAGGTGCTGCT
GGTGGTGGACGGCAATACCGGTCAGAACGCCTTGGCGCAGATCCGCGCTTTCGATGCCGCCATCAATCTGACCGGCCTGG
TCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCCGCCGTGGCCGCGGGCAGCCAGGGCGTGCGCCCGATC
CCGGTGTACTGGATCGGCGTGGGCGAGAGCCTGGAAGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGGGGCTTTGCT
GGCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(63-124)

SRP54-type protein, GTPase domain (SRP54)

(145-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.497

87.679

0.513