Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOC84_RS12100 Genome accession   NZ_CP053985
Coordinates   2496971..2498416 (-) Length   481 a.a.
NCBI ID   WP_173144624.1    Uniprot ID   A0A7D4E519
Organism   Achromobacter pestifer strain FDAARGOS_790     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2491971..2503416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC84_RS12075 (FOC84_12075) - 2493025..2493699 (+) 675 WP_254241963.1 hypothetical protein -
  FOC84_RS12080 (FOC84_12080) bfr 2493782..2494258 (-) 477 WP_013390908.1 bacterioferritin -
  FOC84_RS12085 (FOC84_12085) - 2494625..2495539 (-) 915 WP_173144622.1 DMT family transporter -
  FOC84_RS12090 (FOC84_12090) - 2495668..2496525 (+) 858 WP_173144623.1 LysR substrate-binding domain-containing protein -
  FOC84_RS12095 (FOC84_12095) - 2496556..2496837 (-) 282 WP_054455575.1 bacterioferritin-associated ferredoxin -
  FOC84_RS12100 (FOC84_12100) rpoN/rpoN1 2496971..2498416 (-) 1446 WP_173144624.1 RNA polymerase factor sigma-54 Machinery gene
  FOC84_RS12105 (FOC84_12105) - 2498415..2499044 (+) 630 WP_173144625.1 hypothetical protein -
  FOC84_RS12110 (FOC84_12110) leuA 2499562..2501274 (+) 1713 WP_173144626.1 2-isopropylmalate synthase -
  FOC84_RS12115 (FOC84_12115) - 2501346..2502674 (-) 1329 WP_173144627.1 amidase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52504.85 Da        Isoelectric Point: 4.7496

>NTDB_id=449699 FOC84_RS12100 WP_173144624.1 2496971..2498416(-) (rpoN/rpoN1) [Achromobacter pestifer strain FDAARGOS_790]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLAENPLLERQDEAPSAEAPAESERESSVQDDEP
AAERETPVDEMPGSGGVYPDEDSSRPEAARPDTLREHLLGQLMLTRAAPRDVALAGLLIDELDENGYLGSPLEEILEWLP
AELEPDIDELKAALSLLQSFDPPGIGARDMAECLLLQLRNPDLDQLPEAADAAALVCARQICAQHLALLATGNAARLCAA
VGCDDATFRSAHSLILRLEPRPGRAWTVPAADYAVPDVIVRKTRGGWQVTLNSAAMPKLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVQHQTAFFSQGPVAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTFIRQMVADENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=449699 FOC84_RS12100 WP_173144624.1 2496971..2498416(-) (rpoN/rpoN1) [Achromobacter pestifer strain FDAARGOS_790]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGTCAGCATCTGACGCTGACGCCACAACTGCA
GCAATCGATCCGATTGTTGCAACTGTCCACGCTCGAGCTTGAAGCCGAGATTTCGCAAGTGCTGGCGGAGAACCCGCTGC
TGGAGCGGCAGGACGAAGCGCCGTCGGCCGAGGCGCCGGCCGAGTCCGAGCGCGAGTCCTCCGTGCAGGACGATGAGCCT
GCCGCCGAACGCGAGACGCCGGTGGACGAAATGCCGGGCTCCGGCGGGGTCTACCCCGACGAAGATTCCAGCCGGCCCGA
GGCCGCGCGGCCGGATACGCTGCGCGAGCATCTGCTGGGCCAGCTTATGCTGACACGCGCCGCGCCGCGCGACGTCGCGC
TGGCCGGTCTGCTGATCGACGAGCTGGACGAAAACGGCTACCTGGGATCGCCGCTGGAGGAGATCCTGGAGTGGCTGCCC
GCGGAGCTGGAGCCGGACATCGACGAGCTGAAGGCCGCCCTTTCGCTGCTGCAGTCGTTCGATCCGCCCGGCATCGGCGC
GCGCGACATGGCGGAATGCCTGCTGTTGCAGCTGCGCAACCCGGATCTGGATCAACTGCCCGAAGCGGCCGATGCCGCGG
CCCTGGTCTGTGCCAGGCAGATCTGCGCTCAGCACCTGGCCTTGCTGGCGACGGGCAACGCTGCGCGCCTGTGCGCCGCC
GTGGGCTGCGACGACGCCACGTTCCGCTCGGCCCATTCCCTGATCCTGCGGCTGGAACCGCGCCCGGGACGCGCCTGGAC
CGTGCCCGCGGCCGATTACGCGGTGCCCGACGTCATCGTGCGCAAGACCCGTGGCGGCTGGCAGGTCACCCTCAACAGCG
CCGCCATGCCTAAGTTGCAGATCAACGGCCTGTACGCCCAGATGCTGGGCAACCAGAAGGAGTCCGCGCATGCCGGGCTG
CAATCGCAACTGCAGCAGGCCCGCTGGATGATCCGCAACGTGGAGCAGCGTTTCGACACCATCCTGCGTGTGGCCCAGGC
CATCGTGCAGCACCAGACCGCTTTCTTCAGCCAGGGGCCGGTCGCCATGCGGCCGCTCATCCTGAAGGACATCGCGGGTG
AACTCGGTTTGCACGAATCCACCATTTCACGGGCGACAACGCAGAAGTACATGCTCACTCCGTTTGGTACGCTGGAGCTC
AAGCGCTTCTTCGGAACGGGGGTTTCGACGGACGGCGGGGACGCCACCTCGGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCGGATGAGAACCGGGCCAAACCCTTGTCCGACAGCCAGATCATGCAAAAGCTGGCCGATCAGGGGATAGTCA
TCGCTCGAAGAACGGTGGCAAAGTACCGCGAAGCGCTGCGGATAGCCCCGGCAGCGTTGCGCAAGGCGCAGGCTGCGGCC
CGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4E519

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.111

100

0.503