Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FOC87_RS04550 Genome accession   NZ_CP053981
Coordinates   876150..877277 (+) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus thuringiensis strain FDAARGOS_793     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871150..882277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC87_RS04520 (FOC87_04520) spoIIIJ 871196..871963 (-) 768 WP_000727748.1 YidC family membrane integrase SpoIIIJ -
  FOC87_RS04525 (FOC87_04525) rnpA 872003..872362 (-) 360 WP_000726628.1 ribonuclease P protein component -
  FOC87_RS04530 (FOC87_04530) rpmH 872439..872573 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  FOC87_RS04535 (FOC87_04535) dnaA 873139..874479 (+) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  FOC87_RS04540 (FOC87_04540) dnaN 874658..875797 (+) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  FOC87_RS04545 (FOC87_04545) yaaA 875925..876137 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  FOC87_RS04550 (FOC87_04550) recF 876150..877277 (+) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  FOC87_RS04555 (FOC87_04555) gyrB 877316..879238 (+) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FOC87_RS04560 (FOC87_04560) gyrA 879327..881798 (+) 2472 WP_001282851.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=449653 FOC87_RS04550 WP_000470750.1 876150..877277(+) (recF) [Bacillus thuringiensis strain FDAARGOS_793]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=449653 FOC87_RS04550 WP_000470750.1 876150..877277(+) (recF) [Bacillus thuringiensis strain FDAARGOS_793]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAGAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651