Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC90_RS25840 Genome accession   NZ_CP053972
Coordinates   4314323..4314610 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain FDAARGOS_796     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4309323..4319610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC90_RS25820 (FOC90_25830) - 4310503..4310700 (+) 198 WP_014895224.1 DUF4083 domain-containing protein -
  FOC90_RS25825 (FOC90_25835) - 4310729..4311190 (+) 462 WP_000024996.1 NUDIX hydrolase -
  FOC90_RS25830 (FOC90_25840) nadE 4311232..4312050 (-) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  FOC90_RS25835 (FOC90_25845) - 4312326..4314207 (+) 1882 Protein_4306 ABC transporter permease -
  FOC90_RS25840 (FOC90_25850) abrB 4314323..4314610 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC90_RS25845 (FOC90_25855) - 4314886..4315833 (+) 948 WP_000099758.1 serine protease -
  FOC90_RS25850 (FOC90_25860) - 4315873..4316181 (-) 309 WP_001259903.1 helix-turn-helix transcriptional regulator -
  FOC90_RS25855 (FOC90_25865) - 4316288..4317223 (+) 936 WP_000877948.1 aldo/keto reductase -
  FOC90_RS25860 (FOC90_25870) - 4317248..4317877 (+) 630 Protein_4311 MFS transporter -
  FOC90_RS25865 (FOC90_25875) - 4318197..4318421 (-) 225 WP_000162602.1 hypothetical protein -
  FOC90_RS25870 (FOC90_25880) - 4318506..4318853 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  FOC90_RS25875 (FOC90_25885) - 4319050..4319526 (+) 477 WP_001018103.1 DUF664 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=449592 FOC90_RS25840 WP_000648324.1 4314323..4314610(+) (abrB) [Bacillus thuringiensis strain FDAARGOS_796]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=449592 FOC90_RS25840 WP_000648324.1 4314323..4314610(+) (abrB) [Bacillus thuringiensis strain FDAARGOS_796]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526