Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FOC90_RS22635 Genome accession   NZ_CP053972
Coordinates   3689965..3690288 (-) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain FDAARGOS_796     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684965..3695288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC90_RS22610 (FOC90_22620) - 3685308..3686594 (+) 1287 WP_000247041.1 D-alanyl-D-alanine carboxypeptidase family protein -
  FOC90_RS22615 (FOC90_22625) sipW 3686789..3687358 (+) 570 WP_000767804.1 signal peptidase I SipW -
  FOC90_RS22620 (FOC90_22630) - 3687419..3688006 (+) 588 WP_000172852.1 CalY family protein -
  FOC90_RS22625 (FOC90_22635) - 3688141..3688911 (+) 771 WP_014895204.1 DUF4047 domain-containing protein -
  FOC90_RS22630 (FOC90_22640) calY 3689299..3689892 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  FOC90_RS22635 (FOC90_22645) sinR 3689965..3690288 (-) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  FOC90_RS22640 (FOC90_22650) - 3690368..3690502 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  FOC90_RS22645 (FOC90_22655) inhA1 3690845..3693232 (+) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  FOC90_RS22650 (FOC90_22660) - 3693404..3694771 (+) 1368 WP_000028385.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=449589 FOC90_RS22635 WP_000578875.1 3689965..3690288(-) (sinR) [Bacillus thuringiensis strain FDAARGOS_796]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=449589 FOC90_RS22635 WP_000578875.1 3689965..3690288(-) (sinR) [Bacillus thuringiensis strain FDAARGOS_796]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692