Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FOC96_RS06595 Genome accession   NZ_CP053965
Coordinates   616465..617814 (+) Length   449 a.a.
NCBI ID   WP_000225366.1    Uniprot ID   A0A158RMK4
Organism   Bacillus cereus strain FDAARGOS_802     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611465..622814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC96_RS06575 (FOC96_06570) - 612568..613203 (-) 636 WP_000926685.1 YigZ family protein -
  FOC96_RS06580 (FOC96_06575) - 613443..614285 (+) 843 WP_000844766.1 DegV family protein -
  FOC96_RS06585 (FOC96_06580) - 614459..614773 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  FOC96_RS06590 (FOC96_06585) - 615027..616337 (+) 1311 WP_000734330.1 NlpC/P60 family protein -
  FOC96_RS06595 (FOC96_06590) comFA 616465..617814 (+) 1350 WP_000225366.1 ATP-dependent helicase ComFA Machinery gene
  FOC96_RS06600 (FOC96_06595) comFC 617814..618518 (+) 705 WP_003162242.1 comF operon protein ComFC -
  FOC96_RS06605 (FOC96_06600) cspC 618645..618842 (+) 198 WP_001990088.1 cold shock protein CspC -
  FOC96_RS06610 (FOC96_06605) raiA 619166..619708 (+) 543 WP_000671189.1 ribosome-associated translation inhibitor RaiA -
  FOC96_RS06615 (FOC96_06610) secA 619985..622492 (+) 2508 WP_000579383.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51428.10 Da        Isoelectric Point: 9.6542

>NTDB_id=449509 FOC96_RS06595 WP_000225366.1 616465..617814(+) (comFA) [Bacillus cereus strain FDAARGOS_802]
MVAGKQLLLEELSSDLRRELSDLKKKGEIICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGTLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKEERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KERAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEMSLLLKGLDHRIDGVHAEDPMRKEKVEAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=449509 FOC96_RS06595 WP_000225366.1 616465..617814(+) (comFA) [Bacillus cereus strain FDAARGOS_802]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGATCATATGTGTACAAGGCGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGAATTCATGAAAGAAAAGGAGAAAGAGAATTACATTCGTTACAGTGGAAAGGAACTTT
GTCTACTGGTCAGGAGTTGGCAGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCGTTTTTTATTTGGGCGGTAT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGAAGAAAGAGTTTGTATTGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCATTCC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAGAGCGGCGCGTATTTATTTAACTGCAACCCCGGATGAAAAGTGGAAGCGCAATTTCAGAAGGGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGTAATTGGAAGAAAA
GCCTTCATCATAAAAAAATTCCTCGAGTGTTACTACAATGGTTGAAAATGTACGTAAACAAAAAATATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGAAGCGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCACTACGGCAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158RMK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.914

93.096

0.483
  comFA Latilactobacillus sakei subsp. sakei 23K

40.5

89.087

0.361