Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   STT128_RS08885 Genome accession   NZ_CP065500
Coordinates   1719535..1719828 (-) Length   97 a.a.
NCBI ID   WP_011226625.1    Uniprot ID   Q5M2G2
Organism   Streptococcus thermophilus strain ST128     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1714535..1724828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT128_RS08845 (STT128_08925) - 1714937..1715380 (-) 444 WP_011681680.1 hypothetical protein -
  STT128_RS08850 - 1715454..1715879 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  STT128_RS08855 - 1715836..1716111 (-) 276 WP_011681681.1 hypothetical protein -
  STT128_RS08860 (STT128_08935) - 1716123..1716320 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STT128_RS08865 (STT128_08940) - 1716569..1717762 (-) 1194 WP_014608740.1 acetate kinase -
  STT128_RS08870 (STT128_08945) comGH 1717818..1718774 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STT128_RS08875 (STT128_08950) comGG 1718819..1719136 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  STT128_RS08880 (STT128_08955) comGF 1719114..1719551 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STT128_RS08885 (STT128_08960) comGE 1719535..1719828 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  STT128_RS08890 (STT128_08965) comGD 1719800..1720228 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STT128_RS08895 (STT128_08970) comGC 1720188..1720514 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  STT128_RS08900 (STT128_08975) comGB 1720511..1721611 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STT128_RS08905 (STT128_08980) comGA/cglA/cilD 1721493..1722434 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STT128_RS08910 (STT128_08985) - 1722515..1722877 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.74 Da        Isoelectric Point: 10.4561

>NTDB_id=449503 STT128_RS08885 WP_011226625.1 1719535..1719828(-) (comGE) [Streptococcus thermophilus strain ST128]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=449503 STT128_RS08885 WP_011226625.1 1719535..1719828(-) (comGE) [Streptococcus thermophilus strain ST128]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361