Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FOC61_RS06565 | Genome accession | NZ_CP053957 |
| Coordinates | 1324878..1325852 (+) | Length | 324 a.a. |
| NCBI ID | WP_002453334.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain FDAARGOS_753 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1319878..1330852
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC61_RS06530 (FOC61_06535) | rpmG | 1320391..1320540 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| FOC61_RS06535 (FOC61_06540) | - | 1320689..1321240 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| FOC61_RS06540 (FOC61_06545) | - | 1321241..1322704 (+) | 1464 | WP_002453338.1 | rhomboid family intramembrane serine protease | - |
| FOC61_RS06545 (FOC61_06550) | - | 1322685..1322888 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| FOC61_RS06550 (FOC61_06555) | - | 1322885..1323871 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| FOC61_RS06555 (FOC61_06560) | - | 1323871..1324197 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| FOC61_RS06560 (FOC61_06565) | - | 1324197..1324820 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| FOC61_RS06565 (FOC61_06570) | comGA | 1324878..1325852 (+) | 975 | WP_002453334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FOC61_RS06570 (FOC61_06575) | comGB | 1325824..1326893 (+) | 1070 | Protein_1273 | competence type IV pilus assembly protein ComGB | - |
| FOC61_RS06575 (FOC61_06580) | comGC | 1326912..1327223 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FOC61_RS06580 (FOC61_06585) | comGD | 1327201..1327650 (+) | 450 | WP_121909863.1 | competence type IV pilus minor pilin ComGD | - |
| FOC61_RS06585 (FOC61_06590) | - | 1327637..1327936 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| FOC61_RS12465 | - | 1327926..1328237 (+) | 312 | WP_230455159.1 | hypothetical protein | - |
| FOC61_RS06595 (FOC61_06600) | - | 1328514..1329023 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| FOC61_RS06600 (FOC61_06605) | gcvT | 1329232..1330323 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37118.93 Da Isoelectric Point: 7.7163
>NTDB_id=449484 FOC61_RS06565 WP_002453334.1 1324878..1325852(+) (comGA) [Staphylococcus capitis strain FDAARGOS_753]
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=449484 FOC61_RS06565 WP_002453334.1 1324878..1325852(+) (comGA) [Staphylococcus capitis strain FDAARGOS_753]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |