Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FOC76_RS25560 Genome accession   NZ_CP053955
Coordinates   4992926..4993249 (+) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4987926..4998249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS25545 (FOC76_25545) - 4988441..4989808 (-) 1368 WP_001027468.1 aldehyde dehydrogenase -
  FOC76_RS25550 (FOC76_25550) inhA1 4989981..4992368 (-) 2388 WP_001035938.1 M6 family metalloprotease immune inhibitor InhA1 -
  FOC76_RS25555 (FOC76_25555) - 4992712..4992846 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  FOC76_RS25560 (FOC76_25560) sinR 4992926..4993249 (+) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  FOC76_RS25565 (FOC76_25565) calY 4993325..4993918 (-) 594 WP_000053730.1 biofilm matrix protein CalY -
  FOC76_RS25570 (FOC76_25570) - 4994350..4995156 (-) 807 WP_000917466.1 DUF4047 domain-containing protein -
  FOC76_RS25575 (FOC76_25575) - 4995318..4995905 (-) 588 WP_000172849.1 CalY family protein -
  FOC76_RS25580 (FOC76_25580) sipW 4995968..4996537 (-) 570 WP_000767818.1 signal peptidase I SipW -
  FOC76_RS25585 (FOC76_25585) - 4996730..4998016 (-) 1287 WP_000247016.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=449453 FOC76_RS25560 WP_000578880.1 4992926..4993249(+) (sinR) [Bacillus tropicus strain FDAARGOS_782]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=449453 FOC76_RS25560 WP_000578880.1 4992926..4993249(+) (sinR) [Bacillus tropicus strain FDAARGOS_782]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692