Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC76_RS24240 Genome accession   NZ_CP053955
Coordinates   4750251..4750853 (+) Length   200 a.a.
NCBI ID   WP_000155595.1    Uniprot ID   -
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4745251..4755853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS24195 (FOC76_24195) gpsB 4745484..4745822 (-) 339 WP_000622430.1 cell division regulator GpsB -
  FOC76_RS24200 (FOC76_24200) - 4745920..4746474 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  FOC76_RS24205 (FOC76_24205) - 4746531..4746953 (-) 423 WP_000546269.1 CotD family spore coat protein -
  FOC76_RS24210 (FOC76_24210) - 4747108..4747608 (-) 501 WP_000487702.1 YppG family protein -
  FOC76_RS24215 (FOC76_24215) - 4747786..4747976 (+) 191 Protein_4722 YppF family protein -
  FOC76_RS24220 (FOC76_24220) - 4748001..4748345 (-) 345 WP_000872961.1 YppE family protein -
  FOC76_RS24225 (FOC76_24225) - 4748361..4748603 (-) 243 WP_001252039.1 hypothetical protein -
  FOC76_RS24230 (FOC76_24230) - 4748689..4748865 (+) 177 WP_002020884.1 hypothetical protein -
  FOC76_RS24235 (FOC76_24235) - 4749122..4750147 (-) 1026 WP_033692837.1 DUF2515 domain-containing protein -
  FOC76_RS24240 (FOC76_24240) recU 4750251..4750853 (+) 603 WP_000155595.1 Holliday junction resolvase RecU Machinery gene
  FOC76_RS24245 (FOC76_24245) - 4750919..4753628 (+) 2710 Protein_4728 PBP1A family penicillin-binding protein -
  FOC76_RS24250 (FOC76_24250) - 4753652..4754170 (-) 519 WP_033692812.1 YpoC family protein -
  FOC76_RS24255 (FOC76_24255) nth 4754174..4754821 (-) 648 WP_000933027.1 endonuclease III -
  FOC76_RS24260 (FOC76_24260) dnaD 4754837..4755544 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23338.66 Da        Isoelectric Point: 9.5337

>NTDB_id=449451 FOC76_RS24240 WP_000155595.1 4750251..4750853(+) (recU) [Bacillus tropicus strain FDAARGOS_782]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKYIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=449451 FOC76_RS24240 WP_000155595.1 4750251..4750853(+) (recU) [Bacillus tropicus strain FDAARGOS_782]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTGCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAATATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625