Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC76_RS22280 Genome accession   NZ_CP053955
Coordinates   4346417..4346704 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4341417..4351704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS22260 (FOC76_22260) - 4342028..4342963 (-) 936 WP_000877958.1 aldo/keto reductase -
  FOC76_RS22265 (FOC76_22265) - 4343070..4343378 (+) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  FOC76_RS22270 (FOC76_22270) galT 4343491..4344981 (-) 1491 WP_000640230.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  FOC76_RS22275 (FOC76_22275) - 4345193..4346143 (-) 951 WP_001089038.1 serine protease -
  FOC76_RS22280 (FOC76_22280) abrB 4346417..4346704 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC76_RS22285 (FOC76_22285) - 4346820..4348700 (-) 1881 WP_001026027.1 FtsX-like permease family protein -
  FOC76_RS22290 (FOC76_22290) nadE 4348972..4349790 (+) 819 WP_000174890.1 ammonia-dependent NAD(+) synthetase -
  FOC76_RS22295 (FOC76_22295) - 4349836..4350297 (-) 462 WP_000024988.1 NUDIX hydrolase -
  FOC76_RS22300 (FOC76_22300) - 4350321..4350518 (-) 198 WP_001048100.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=449450 FOC76_RS22280 WP_000648330.1 4346417..4346704(-) (abrB) [Bacillus tropicus strain FDAARGOS_782]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=449450 FOC76_RS22280 WP_000648330.1 4346417..4346704(-) (abrB) [Bacillus tropicus strain FDAARGOS_782]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCAAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516