Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOC76_RS12260 Genome accession   NZ_CP053955
Coordinates   2350995..2351429 (+) Length   144 a.a.
NCBI ID   WP_000811502.1    Uniprot ID   A0A5C5ACH0
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2345995..2356429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS12240 (FOC76_12240) - 2346890..2348047 (-) 1158 WP_000434566.1 aminotransferase A -
  FOC76_RS12245 (FOC76_12245) - 2348171..2348371 (-) 201 WP_000929285.1 hypothetical protein -
  FOC76_RS12250 (FOC76_12250) kinB 2348681..2349955 (+) 1275 WP_000420393.1 sporulation sensor histidine kinase KinB -
  FOC76_RS12255 (FOC76_12255) - 2350009..2350758 (-) 750 WP_000388474.1 DUF3967 domain-containing protein -
  FOC76_RS12260 (FOC76_12260) nucA/comI 2350995..2351429 (+) 435 WP_000811502.1 DNA-entry nuclease Machinery gene
  FOC76_RS12265 (FOC76_12265) comJ 2351466..2351855 (+) 390 WP_000424012.1 competence protein ComJ -
  FOC76_RS12270 (FOC76_12270) metE 2351893..2354181 (-) 2289 WP_001007641.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FOC76_RS12275 (FOC76_12275) - 2354850..2355407 (-) 558 WP_000062074.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=449442 FOC76_RS12260 WP_000811502.1 2350995..2351429(+) (nucA/comI) [Bacillus tropicus strain FDAARGOS_782]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=449442 FOC76_RS12260 WP_000811502.1 2350995..2351429(+) (nucA/comI) [Bacillus tropicus strain FDAARGOS_782]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTATTAAAAAAACAAATGCATATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTGTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAA
TTATCATTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACACATTGAATATATAAGTCCAGCAGATAACCGTGGAGCAGGGTCTTGGGTAGGAAATAAGCTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ACH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549