Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FOC76_RS04880 Genome accession   NZ_CP053955
Coordinates   963287..964414 (-) Length   375 a.a.
NCBI ID   WP_000470746.1    Uniprot ID   A0A243B7E4
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958287..969414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS04870 (FOC76_04870) gyrA 958766..961237 (-) 2472 WP_001282856.1 DNA gyrase subunit A -
  FOC76_RS04875 (FOC76_04875) gyrB 961326..963248 (-) 1923 WP_000435986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FOC76_RS04880 (FOC76_04880) recF 963287..964414 (-) 1128 WP_000470746.1 DNA replication/repair protein RecF Machinery gene
  FOC76_RS04885 (FOC76_04885) yaaA 964427..964639 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  FOC76_RS04890 (FOC76_04890) dnaN 964767..965906 (-) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  FOC76_RS04895 (FOC76_04895) dnaA 966085..967425 (-) 1341 WP_000428026.1 chromosomal replication initiator protein DnaA -
  FOC76_RS04900 (FOC76_04900) rpmH 967990..968124 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  FOC76_RS04905 (FOC76_04905) rnpA 968201..968548 (+) 348 WP_000726630.1 ribonuclease P protein component -
  FOC76_RS04910 (FOC76_04910) spoIIIJ 968601..969368 (+) 768 WP_000727745.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=449423 FOC76_RS04880 WP_000470746.1 963287..964414(-) (recF) [Bacillus tropicus strain FDAARGOS_782]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=449423 FOC76_RS04880 WP_000470746.1 963287..964414(-) (recF) [Bacillus tropicus strain FDAARGOS_782]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAGGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAGATATTGCAAAAGCGTTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATCCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243B7E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653