Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC76_RS04680 Genome accession   NZ_CP053955
Coordinates   926759..927043 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 921759..932043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS04665 (FOC76_04665) rnmV 922549..923106 (-) 558 WP_000692830.1 ribonuclease M5 -
  FOC76_RS04670 (FOC76_04670) - 923324..924091 (-) 768 WP_000895835.1 TatD family hydrolase -
  FOC76_RS04675 (FOC76_04675) metG 924258..926240 (-) 1983 WP_000134149.1 methionine--tRNA ligase -
  FOC76_RS04680 (FOC76_04680) abrB 926759..927043 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC76_RS04685 (FOC76_04685) rsmI 927064..927939 (-) 876 WP_000267807.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FOC76_RS04690 (FOC76_04690) - 927908..928198 (-) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  FOC76_RS04695 (FOC76_04695) - 928185..928925 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FOC76_RS04700 (FOC76_04700) yabA 929046..929396 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  FOC76_RS04705 (FOC76_04705) - 929411..930238 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  FOC76_RS04710 (FOC76_04710) holB 930244..931227 (-) 984 WP_000978580.1 DNA polymerase III subunit delta' -
  FOC76_RS04715 (FOC76_04715) tmk 931263..931889 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=449421 FOC76_RS04680 WP_000843036.1 926759..927043(+) (abrB) [Bacillus tropicus strain FDAARGOS_782]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=449421 FOC76_RS04680 WP_000843036.1 926759..927043(+) (abrB) [Bacillus tropicus strain FDAARGOS_782]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851