Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC92_RS23495 Genome accession   NZ_CP053954
Coordinates   3931325..3931927 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain FDAARGOS_798     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3926325..3936927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC92_RS23475 (FOC92_23475) dnaD 3926640..3927347 (+) 708 WP_000728552.1 DNA replication protein DnaD -
  FOC92_RS23480 (FOC92_23480) nth 3927363..3928010 (+) 648 WP_000933034.1 endonuclease III -
  FOC92_RS23485 (FOC92_23485) - 3928014..3928532 (+) 519 WP_172852831.1 YpoC family protein -
  FOC92_RS23490 (FOC92_23490) - 3928559..3931258 (-) 2700 WP_172852832.1 PBP1A family penicillin-binding protein -
  FOC92_RS23495 (FOC92_23495) recU 3931325..3931927 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  FOC92_RS23500 (FOC92_23500) - 3932031..3933056 (+) 1026 WP_172852833.1 DUF2515 domain-containing protein -
  FOC92_RS31560 - 3933208..3933387 (-) 180 WP_001987054.1 hypothetical protein -
  FOC92_RS23505 (FOC92_23505) - 3933473..3933715 (+) 243 WP_070757132.1 hypothetical protein -
  FOC92_RS23510 (FOC92_23510) - 3933731..3934075 (+) 345 WP_000786940.1 YppE family protein -
  FOC92_RS23515 (FOC92_23515) - 3934108..3934293 (-) 186 WP_097813792.1 YppF family protein -
  FOC92_RS23520 (FOC92_23520) - 3934471..3934995 (+) 525 WP_000487626.1 YppG family protein -
  FOC92_RS23525 (FOC92_23525) - 3935151..3935579 (+) 429 WP_000546268.1 CotD family spore coat protein -
  FOC92_RS23530 (FOC92_23530) - 3935636..3936190 (+) 555 WP_016109668.1 DUF1273 domain-containing protein -
  FOC92_RS23535 (FOC92_23535) gpsB 3936288..3936623 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=449410 FOC92_RS23495 WP_000155598.1 3931325..3931927(-) (recU) [Bacillus cereus strain FDAARGOS_798]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=449410 FOC92_RS23495 WP_000155598.1 3931325..3931927(-) (recU) [Bacillus cereus strain FDAARGOS_798]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635