Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOC93_RS27935 Genome accession   NZ_CP053951
Coordinates   4825496..4826539 (+) Length   347 a.a.
NCBI ID   WP_001013185.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_799     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4820496..4831539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC93_RS27900 (FOC93_27910) - 4820862..4821350 (+) 489 WP_000764261.1 hypothetical protein -
  FOC93_RS27905 (FOC93_27915) - 4821385..4821696 (-) 312 WP_001093237.1 hypothetical protein -
  FOC93_RS27910 (FOC93_27920) - 4821949..4822164 (+) 216 WP_001008326.1 DUF3912 family protein -
  FOC93_RS27915 (FOC93_27925) - 4822252..4822644 (+) 393 WP_000875390.1 hypothetical protein -
  FOC93_RS27920 (FOC93_27930) - 4822724..4824118 (-) 1395 WP_001094331.1 cation:dicarboxylase symporter family transporter -
  FOC93_RS27925 (FOC93_27935) - 4824226..4824468 (-) 243 WP_000375619.1 DUF2626 domain-containing protein -
  FOC93_RS27930 (FOC93_27940) - 4824595..4825290 (-) 696 WP_000434124.1 helix-turn-helix domain-containing protein -
  FOC93_RS27935 (FOC93_27945) comGA 4825496..4826539 (+) 1044 WP_001013185.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC93_RS27940 (FOC93_27950) comGB 4826526..4827563 (+) 1038 WP_002101326.1 competence type IV pilus assembly protein ComGB -
  FOC93_RS27945 (FOC93_27955) comGC 4827575..4827874 (+) 300 WP_001178686.1 competence type IV pilus major pilin ComGC -
  FOC93_RS27950 (FOC93_27960) comGD 4827871..4828326 (+) 456 WP_000813142.1 competence type IV pilus minor pilin ComGD -
  FOC93_RS27955 (FOC93_27965) - 4828319..4828621 (+) 303 WP_000829473.1 hypothetical protein -
  FOC93_RS27960 (FOC93_27970) comGF 4828591..4829061 (+) 471 WP_000923099.1 competence type IV pilus minor pilin ComGF -
  FOC93_RS27965 (FOC93_27975) comGG 4829058..4829429 (+) 372 WP_001231273.1 competence type IV pilus minor pilin ComGG -
  FOC93_RS27970 (FOC93_27980) - 4829606..4830256 (+) 651 WP_000183860.1 2OG-Fe(II) oxygenase -
  FOC93_RS27975 (FOC93_27985) - 4830372..4830869 (+) 498 WP_061654475.1 shikimate kinase -
  FOC93_RS27980 (FOC93_27990) - 4830908..4831108 (+) 201 WP_000106083.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39088.42 Da        Isoelectric Point: 8.3597

>NTDB_id=449361 FOC93_RS27935 WP_001013185.1 4825496..4826539(+) (comGA) [Bacillus cereus strain FDAARGOS_799]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTSQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=449361 FOC93_RS27935 WP_001013185.1 4825496..4826539(+) (comGA) [Bacillus cereus strain FDAARGOS_799]
ATGAATGGGATTGAAATTTTCGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTATAGGAAAAGATTTAATGACGAGCCAGTGTATTGAAAAGGAGTTTGGAG
AGAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGCTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559