Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   STAVA116_RS05060 Genome accession   NZ_CP065498
Coordinates   972232..972714 (-) Length   160 a.a.
NCBI ID   WP_011226072.1    Uniprot ID   Q5M461
Organism   Streptococcus thermophilus strain AVA116     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967232..977714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS05040 (STAVA116_05010) pepT 967712..968935 (-) 1224 WP_087009962.1 peptidase T -
  STAVA116_RS05045 (STAVA116_05015) lepB 969144..969701 (-) 558 WP_087009963.1 signal peptidase I -
  STAVA116_RS05050 (STAVA116_05020) - 969824..971053 (-) 1230 WP_087009964.1 tetratricopeptide repeat protein -
  STAVA116_RS05055 (STAVA116_05025) - 971043..972221 (-) 1179 WP_011227264.1 AI-2E family transporter -
  STAVA116_RS05060 (STAVA116_05030) mutX 972232..972714 (-) 483 WP_011226072.1 8-oxo-dGTP diphosphatase Machinery gene
  STAVA116_RS05065 (STAVA116_05035) ftsX 972870..973799 (-) 930 WP_011681194.1 permease-like cell division protein FtsX -
  STAVA116_RS05070 (STAVA116_05040) ftsE 973792..974484 (-) 693 WP_022096763.1 cell division ATP-binding protein FtsE -
  STAVA116_RS05080 (STAVA116_05050) queG 975723..976841 (-) 1119 WP_002953100.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18869.36 Da        Isoelectric Point: 4.7200

>NTDB_id=449353 STAVA116_RS05060 WP_011226072.1 972232..972714(-) (mutX) [Streptococcus thermophilus strain AVA116]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=449353 STAVA116_RS05060 WP_011226072.1 972232..972714(-) (mutX) [Streptococcus thermophilus strain AVA116]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAAGCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTCGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTCCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M461

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706