Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   G4D73_RS03740 Genome accession   NZ_CP053947
Coordinates   802678..803187 (-) Length   169 a.a.
NCBI ID   WP_213687409.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797678..808187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS03710 tadA 797912..798427 (-) 516 WP_114541085.1 tRNA adenosine(34) deaminase TadA -
  G4D73_RS03715 - 798435..799556 (-) 1122 WP_213687406.1 enoyl-CoA hydratase/isomerase family protein -
  G4D73_RS03720 ung 799553..800266 (-) 714 WP_005247316.1 uracil-DNA glycosylase -
  G4D73_RS03725 - 800313..800909 (-) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  G4D73_RS03730 gspK 801062..802033 (-) 972 WP_213687407.1 type II secretion system minor pseudopilin GspK -
  G4D73_RS03735 xcpW 802040..802681 (-) 642 WP_213687408.1 type II secretion system minor pseudopilin GspJ Machinery gene
  G4D73_RS03740 xcpV 802678..803187 (-) 510 WP_213687409.1 type II secretion system minor pseudopilin GspI Machinery gene
  G4D73_RS03745 - 803177..803728 (-) 552 WP_129716645.1 type II secretion system protein -
  G4D73_RS03750 - 803738..804352 (-) 615 WP_213687410.1 TetR/AcrR family transcriptional regulator -
  G4D73_RS03755 - 804394..805167 (-) 774 WP_005106566.1 TatD family hydrolase -
  G4D73_RS03760 - 805195..805536 (-) 342 WP_004278877.1 PilZ domain-containing protein -
  G4D73_RS03765 - 805552..806532 (-) 981 WP_213687411.1 DNA polymerase III subunit delta' -
  G4D73_RS03770 kdsB 806547..807308 (-) 762 WP_138742527.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19045.75 Da        Isoelectric Point: 10.1797

>NTDB_id=449289 G4D73_RS03740 WP_213687409.1 802678..803187(-) (xcpV) [Acinetobacter sp. WY4]
MKSRYFKQNTGFGAIRPSITRLNRVHSEQSSLSCARTKRCFVYPRSGFTLLEVMVALAIFATAAMTLTKVAMQYTQSTSN
AILRTKAQFVALNEVAQMEINQEWMEGTASKQLTQQGETWQIDKRSEPTVSPNVQRIELQVSLVNQDSGQVESGISSLMF
FNHRMNNTP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=449289 G4D73_RS03740 WP_213687409.1 802678..803187(-) (xcpV) [Acinetobacter sp. WY4]
ATGAAATCTAGATATTTCAAGCAGAATACTGGATTTGGTGCTATCAGGCCGAGTATTACTCGGCTTAATCGTGTGCACTC
TGAACAGAGTTCGTTATCTTGCGCTCGGACGAAACGTTGTTTCGTTTATCCTCGCTCAGGTTTTACCTTGTTGGAAGTCA
TGGTGGCCTTGGCAATTTTTGCGACCGCAGCCATGACCTTGACCAAAGTCGCAATGCAATATACCCAGTCGACCTCGAAT
GCCATTCTACGTACCAAAGCGCAGTTTGTTGCCTTAAATGAAGTGGCACAAATGGAAATCAATCAGGAATGGATGGAGGG
TACAGCTTCTAAGCAGCTGACCCAGCAAGGTGAAACTTGGCAGATTGACAAGCGCAGCGAACCGACGGTCAGTCCGAATG
TGCAGCGAATCGAATTGCAGGTGAGTCTGGTTAATCAGGACAGTGGTCAGGTTGAATCTGGCATCAGCAGCCTGATGTTC
TTTAATCATCGCATGAACAATACTCCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(84-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(45-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.214

69.231

0.521