Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ST4067_RS07685 Genome accession   NZ_CP065496
Coordinates   1473544..1474287 (-) Length   247 a.a.
NCBI ID   WP_164178279.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468544..1479287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS07655 (ST4067_07670) - 1468815..1469759 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  ST4067_RS07660 (ST4067_07675) sepM 1469844..1470920 (-) 1077 WP_204360114.1 SepM family pheromone-processing serine protease Regulator
  ST4067_RS07665 (ST4067_07680) coaD 1470898..1471395 (-) 498 WP_164178277.1 pantetheine-phosphate adenylyltransferase -
  ST4067_RS07670 (ST4067_07685) rsmD 1471429..1472028 (-) 600 Protein_1457 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ST4067_RS07675 (ST4067_07690) trxB 1472119..1473072 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  ST4067_RS07680 (ST4067_07695) - 1473105..1473329 (-) 225 WP_002951743.1 DUF4059 family protein -
  ST4067_RS07685 (ST4067_07700) amiE 1473544..1474287 (-) 744 WP_164178279.1 amino acid ABC transporter ATP-binding protein Regulator
  ST4067_RS07690 (ST4067_07705) - 1474287..1475033 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  ST4067_RS07695 (ST4067_07710) - 1475427..1476257 (-) 831 WP_263604480.1 transporter substrate-binding domain-containing protein -
  ST4067_RS07700 (ST4067_07715) - 1476838..1477071 (-) 234 WP_263604481.1 hypothetical protein -
  ST4067_RS07705 (ST4067_07720) dinB 1477357..1478460 (-) 1104 WP_263604482.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27733.86 Da        Isoelectric Point: 5.4718

>NTDB_id=449280 ST4067_RS07685 WP_164178279.1 1473544..1474287(-) (amiE) [Streptococcus thermophilus strain 4067]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=449280 ST4067_RS07685 WP_164178279.1 1473544..1474287(-) (amiE) [Streptococcus thermophilus strain 4067]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCTTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACAATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364