Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOC66_RS08705 Genome accession   NZ_CP053939
Coordinates   1817259..1818791 (+) Length   510 a.a.
NCBI ID   WP_003747770.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812259..1823791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS08685 (FOC66_08685) - 1812435..1813004 (+) 570 WP_036493962.1 L-threonylcarbamoyladenylate synthase -
  FOC66_RS08690 (FOC66_08690) - 1813393..1813833 (-) 441 WP_003747764.1 surface-adhesin E family protein -
  FOC66_RS08695 (FOC66_08695) purB 1814044..1815414 (+) 1371 WP_003747766.1 adenylosuccinate lyase -
  FOC66_RS08700 (FOC66_08700) msrAB 1815545..1817113 (-) 1569 WP_036493918.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  FOC66_RS08705 (FOC66_08705) pilA 1817259..1818791 (+) 1533 WP_003747770.1 signal recognition particle-docking protein FtsY Machinery gene
  FOC66_RS08710 (FOC66_08710) - 1818949..1819845 (-) 897 WP_003747772.1 polyprenyl synthetase family protein -
  FOC66_RS08715 (FOC66_08715) - 1819829..1820056 (-) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  FOC66_RS08720 (FOC66_08720) - 1820192..1822048 (-) 1857 WP_003747773.1 RNB domain-containing ribonuclease -
  FOC66_RS08725 (FOC66_08725) - 1822157..1823077 (-) 921 WP_003747776.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54585.45 Da        Isoelectric Point: 4.1789

>NTDB_id=449270 FOC66_RS08705 WP_003747770.1 1817259..1818791(+) (pilA) [Neisseria mucosa strain FDAARGOS_758]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVEDIKEDAESLAESVKGHIELVVESAVETVSETVEQVREALTETP
SETVEKVEEHVEAAKEAAVETVSEAVEQVQETVAEMPSEAAEAAEEAAEQAEATKEAAVETVSEAVEQVQETVAEMPSEA
AEAAEEVAEQAEAGKEEAVEAVSEAVEQVQEAVAETPAEAPAPVEEQKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLVKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=449270 FOC66_RS08705 WP_003747770.1 1817259..1818791(+) (pilA) [Neisseria mucosa strain FDAARGOS_758]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAGTCTGAAGTTGCTCAAGTAGTTGAAGATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATA
TTGAATTAGTTGTCGAATCGGCTGTTGAAACTGTCAGTGAAACCGTCGAGCAGGTGCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAGTGGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTCAGCGAGGCTGTTGA
ACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGCGGCTGAGGCTGCTGAAGAAGCAGCGGAACAGGCTGAGGCGA
CAAAAGAAGCAGCCGTTGAAACCGTCAGCGAGGCTGTTGAACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGCG
GCTGAGGCTGCTGAAGAAGTAGCGGAACAGGCCGAAGCGGGCAAAGAAGAAGCTGTTGAAGCAGTTAGTGAAGCTGTTGA
ACAGGTTCAAGAAGCCGTTGCGGAAACCCCGGCTGAAGCCCCTGCTCCGGTAGAAGAACAAAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGTGACAAAATGGCAAAATCGTTGGCCGGCGTGTTTGGCGGCGGACAAATCGAC
GAGGATTTGTACGAAGAGCTGGAAACTGTGCTGATTACCAGCGATATGGGCATGGAAGCCACTGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGCGCGCTGAAAGATGCGCTGTACGACT
TGGTTAAGCCTTTGGAAAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATTAATGGC
GCGGGTAAAACCACGTCTATCGGTAAATTGGCCAAATACTTCCAAGCGCAGGGCAAATCTGTATTGCTGGCGGCAGGTGA
TACTTTCCGCGCCGCCGCGCGTGAGCAGCTTCAAGCTTGGGGCGAGCGCAACAATGTAACCGTGATTTCGCAAACTACGG
GTGATTCCGCCGCCGTTTGCTTCGATGCCGTCCAAGCCGCGAAAGCGCGCGGTATCGACATTGTGCTGGCCGATACTGCC
GGCCGCCTGCCGACGCAACTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGTTGCAAAAAGCCATGCCGGATGC
GCCACATGAAATCATTGTTGTACTTGATGCCAACATCGGTCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCAT
TGGGTTTGACCGGCCTGATCGTCACCAAGCTCGACGGTACGGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGC
CCAGTTCCCGTACGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTTGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.878

80.392

0.682