Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FOC66_RS05350 Genome accession   NZ_CP053939
Coordinates   1132731..1134956 (-) Length   741 a.a.
NCBI ID   WP_003747394.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1127731..1139956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS05325 (FOC66_05325) - 1128213..1129118 (-) 906 WP_003747385.1 DMT family transporter -
  FOC66_RS05330 (FOC66_05330) trpB 1129320..1130522 (-) 1203 WP_003747387.1 tryptophan synthase subunit beta -
  FOC66_RS05335 (FOC66_05335) - 1130635..1131045 (-) 411 WP_003747389.1 hypothetical protein -
  FOC66_RS05340 (FOC66_05340) - 1131050..1131652 (-) 603 WP_003747391.1 hypothetical protein -
  FOC66_RS05345 (FOC66_05345) - 1131689..1132309 (-) 621 WP_003747392.1 phosphoribosylanthranilate isomerase -
  FOC66_RS05350 (FOC66_05350) comA 1132731..1134956 (-) 2226 WP_003747394.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOC66_RS05365 (FOC66_05365) - 1135404..1136795 (+) 1392 WP_003747397.1 3'-5' exonuclease family protein -
  FOC66_RS05370 (FOC66_05370) - 1136993..1137784 (+) 792 WP_003747399.1 Cof-type HAD-IIB family hydrolase -
  FOC66_RS05375 (FOC66_05375) - 1137849..1138055 (-) 207 WP_003747401.1 DUF2788 domain-containing protein -
  FOC66_RS05380 (FOC66_05380) metZ 1138144..1139313 (-) 1170 WP_003747403.1 O-succinylhomoserine sulfhydrylase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 81124.59 Da        Isoelectric Point: 9.6789

>NTDB_id=449257 FOC66_RS05350 WP_003747394.1 1132731..1134956(-) (comA) [Neisseria mucosa strain FDAARGOS_758]
MAWRFVLPAWVVGVVLSFALPFVPPWWAWLSVMMGALALCRRFAVAWLALAVCMGMAFGVWRTGLVLADQWPVGEVAAKV
LTVEVADMPRDDGRRVQFAARAWDERGQAFDLMLSDYQRRDWTVGSRWSVSARVRPVIGEVNVRGLNRETWALANGIDGM
GTLGRDRKLVRQGGAFGLANIRDAVSRSWQGTADKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVAVLFAWLIKRVFRYLPWIPAKPRVWILAGGVAGALFYALLAGFSVPTQRSVLMLASFAWAWWRGSSGSGWAAWWQV
LAVVLLLDPLAVLGVGTWLSFGLVAALIWVSSGRLKESGWRLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFPFEPVQLVAAFLAEYTLRGLVWLATVSPEFAVAATPVPLLVLAMMAALLLLLPKGMGLKPWACLVL
LGFVFYHPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGTDKLLAGQPEFYPNAEFCQEDKWQWDGVDFELLRPSENTGKEDNDQSCVLRVVANGQALLITGDLGVKGEAGL
IEKYGNALYSQVLVLGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTIAVQNRVRAHGITLLRTDLSGALVFVLGQ
DDVFRGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=449257 FOC66_RS05350 WP_003747394.1 1132731..1134956(-) (comA) [Neisseria mucosa strain FDAARGOS_758]
ATGGCGTGGCGGTTTGTGTTGCCTGCTTGGGTGGTTGGGGTAGTGCTTTCGTTTGCGTTGCCGTTTGTGCCGCCATGGTG
GGCTTGGTTGTCTGTAATGATGGGTGCGCTTGCGTTGTGTCGAAGATTTGCTGTGGCTTGGTTGGCGCTGGCCGTCTGCA
TGGGCATGGCGTTTGGTGTGTGGCGGACCGGGCTGGTTTTGGCCGATCAATGGCCTGTAGGGGAGGTGGCGGCTAAAGTT
TTAACGGTTGAAGTGGCGGATATGCCGCGTGATGATGGTCGGCGCGTGCAGTTTGCGGCAAGGGCTTGGGATGAGCGTGG
TCAGGCTTTTGATTTGATGTTGTCAGATTATCAGCGGCGCGATTGGACGGTGGGCAGTCGGTGGTCTGTGTCGGCGCGGG
TAAGGCCGGTAATCGGTGAAGTGAATGTGCGCGGTTTGAACCGTGAAACATGGGCTTTGGCCAATGGTATCGACGGCATG
GGTACTTTGGGGCGCGATAGGAAACTTGTGCGGCAAGGCGGTGCTTTCGGTTTGGCTAATATACGTGATGCGGTAAGCCG
AAGTTGGCAGGGAACGGCGGACAAATATCCTGAGTTTTCAGACGGCATAGGGTTGATGCGTGCTTTGAGTATTGGTGAGC
AATCGGCGTTACGGCCGCCTTTGTGGCAGGCATTCCGTCCTTTGGGGCTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTAACGATGGTGGCGGTATTGTTTGCCTGGCTGATCAAGCGGGTTTTCCGTTACTTGCCGTGGATTCCGGCGAAACCGCG
TGTGTGGATATTGGCCGGCGGTGTTGCCGGGGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCCGTACCGACGCAACGCA
GTGTGTTGATGTTGGCTTCGTTTGCGTGGGCATGGTGGCGCGGCAGTAGCGGCTCGGGTTGGGCGGCATGGTGGCAGGTT
TTGGCCGTTGTTTTGTTGTTGGACCCGTTGGCCGTATTGGGTGTGGGAACGTGGTTGTCTTTCGGCTTGGTTGCTGCTTT
GATTTGGGTTTCATCAGGCCGTCTGAAAGAGTCGGGCTGGCGTTTGGCTGTACGGGGACAATGGGCGGCGACGGTATTGT
CGGTGGTATTGCTGGGCTATTTGTTTGCTTCGTTACCTTTGCTCAGTCCCTTGGTTAATGCGCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCAGTTTTTCCGTTTGAACCTGTCCAGTTGGTAGCGGCATTTTTGGC
GGAATATACTTTACGCGGTTTGGTATGGCTGGCTACGGTATCGCCTGAATTTGCCGTTGCAGCGACGCCCGTGCCTTTGC
TGGTGTTGGCGATGATGGCGGCTTTGCTGTTATTGCTGCCTAAAGGAATGGGCTTGAAACCTTGGGCATGTTTGGTTTTA
TTGGGTTTTGTGTTTTACCATCCTGCCAAGTTGGAGGAGGGGGTGGCAAGAGTTACGGTGATGGATGCGGGGCAAGGTTT
GTCGGTGTTGATACAAACGCGCAACCGCAATCTTTTGTTTGATACGGGAACGGAGCAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCGATGGGTGTGCGCCGTTTGGACAGCTTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAAAGTGTAGCGGCTGTTGGTACCGATAAATTGCTTGCCGGACAACCTGAGTTTTATCCGAATGCAGAGTTTTGCCAAGA
AGACAAATGGCAATGGGACGGCGTAGATTTCGAGTTGCTCAGGCCGTCTGAAAATACGGGTAAGGAAGATAACGATCAAA
GCTGCGTATTGCGTGTCGTGGCAAACGGCCAAGCCTTGTTGATAACCGGCGATTTGGGCGTGAAGGGCGAGGCCGGTTTG
ATTGAGAAATACGGCAATGCGTTGTATAGCCAAGTGTTGGTATTGGGACATCACGGCAGCAGCACGGCTTCGTCAGGCAG
CTTTCTGCATACGGTTTCGCCGCAATATGCCGTGGCATCCAGCGGCTATGCCAATGCCTACAAACATCCGACCATTGCCG
TACAAAATCGTGTCCGTGCGCACGGCATTACTTTGTTGAGAACAGATTTGTCAGGCGCATTGGTGTTTGTTTTGGGGCAA
GATGATGTGTTCCGAGGCCGCCTAAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

69.919

99.595

0.696