Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC66_RS05220 Genome accession   NZ_CP053939
Coordinates   1107595..1108971 (+) Length   458 a.a.
NCBI ID   WP_003747343.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102595..1113971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS05200 (FOC66_05200) - 1103172..1105061 (-) 1890 WP_003747334.1 Z1 domain-containing protein -
  FOC66_RS05205 (FOC66_05205) - 1105062..1106102 (-) 1041 WP_003747335.1 restriction endonuclease PLD domain-containing protein -
  FOC66_RS05210 (FOC66_05210) - 1106099..1107223 (-) 1125 WP_003747338.1 DNA cytosine methyltransferase -
  FOC66_RS05215 (FOC66_05215) - 1107272..1107514 (-) 243 WP_172884820.1 hypothetical protein -
  FOC66_RS05220 (FOC66_05220) radA 1107595..1108971 (+) 1377 WP_003747343.1 DNA repair protein RadA Machinery gene
  FOC66_RS05225 (FOC66_05225) - 1109123..1109929 (+) 807 WP_003747346.1 DUF4198 domain-containing protein -
  FOC66_RS05230 (FOC66_05230) - 1109985..1110545 (-) 561 WP_003747348.1 pseudouridine synthase -
  FOC66_RS05240 (FOC66_05240) - 1110919..1111431 (+) 513 WP_003747350.1 hypothetical protein -
  FOC66_RS05245 (FOC66_05245) - 1111484..1112101 (+) 618 WP_003747351.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49318.72 Da        Isoelectric Point: 7.0601

>NTDB_id=449256 FOC66_RS05220 WP_003747343.1 1107595..1108971(+) (radA) [Neisseria mucosa strain FDAARGOS_758]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLASPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=449256 FOC66_RS05220 WP_003747343.1 1107595..1108971(+) (radA) [Neisseria mucosa strain FDAARGOS_758]
ATGGCAAAAGCCCCAAAAACCATCTACCAATGTTCTGAATGCGGCGGTACGTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCTTCGCCCGAACCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTACCGAAGTGCCGCGCAATCCGACCGGCATGGGAGAACTTGAC
CGCGTATTGGGCGGCGGTTTGGTTGATGGCGCGGTTATTCTGCTCGGCGGTGATCCCGGCATTGGTAAATCCACATTACT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTGTACGTTTCCGGCGAGGAATCTGCCCAACAGGTCGCCC
TGCGCGCACAACGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTAAAACAGCATCAGCCCGAAGTCGTGGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATCCGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGAGATGACACGCCCGGCTCGT
GCGTTTTGGTCACGCAAGAAGGCAGTCGCCCGCTTCTGGTCGAAATTCAGGCATTGGTCGATGATGCGCACGGCTTTACC
CCCAAACGCCTCACCGTCGGTCTCGAACAAAACCGCCTCGCCATGTTGCTCGCCGTCCTCAACCGCCACGGCGGCATTGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCTGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATTGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTCT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis NCTC 12261

47.149

99.563

0.469
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis SK321

47.228

98.472

0.465