Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   FOC66_RS04900 Genome accession   NZ_CP053939
Coordinates   1039658..1040803 (-) Length   381 a.a.
NCBI ID   WP_003747222.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1034658..1045803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS04870 (FOC66_04870) - 1035098..1035745 (-) 648 WP_003747212.1 nuclease-related domain-containing protein -
  FOC66_RS04875 (FOC66_04875) folB 1035792..1036142 (-) 351 WP_003747214.1 dihydroneopterin aldolase -
  FOC66_RS04880 (FOC66_04880) plsY 1036200..1036811 (+) 612 WP_003747215.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  FOC66_RS04885 (FOC66_04885) greB 1036898..1037389 (-) 492 WP_003747216.1 transcription elongation factor GreB -
  FOC66_RS04890 (FOC66_04890) purF 1037464..1039008 (-) 1545 WP_003747218.1 amidophosphoribosyltransferase -
  FOC66_RS04895 (FOC66_04895) - 1039162..1039665 (-) 504 WP_003747220.1 CvpA family protein -
  FOC66_RS04900 (FOC66_04900) tpc 1039658..1040803 (-) 1146 WP_003747222.1 cell division protein FtsN Machinery gene
  FOC66_RS04905 (FOC66_04905) folC 1040817..1042100 (-) 1284 WP_003747224.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  FOC66_RS04910 (FOC66_04910) - 1042139..1042591 (-) 453 WP_003747226.1 protein YgfX -
  FOC66_RS04915 (FOC66_04915) - 1042596..1042955 (-) 360 WP_003747228.1 hypothetical protein -
  FOC66_RS04920 (FOC66_04920) - 1043019..1043747 (-) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  FOC66_RS04925 (FOC66_04925) - 1043747..1044004 (-) 258 WP_155811700.1 hypothetical protein -
  FOC66_RS04930 (FOC66_04930) rsmA 1044079..1044858 (-) 780 WP_003747234.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  FOC66_RS04935 (FOC66_04935) - 1044947..1045546 (-) 600 WP_003747236.1 Maf family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41749.72 Da        Isoelectric Point: 9.8424

>NTDB_id=449254 FOC66_RS04900 WP_003747222.1 1039658..1040803(-) (tpc) [Neisseria mucosa strain FDAARGOS_758]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQTQVKTADEPSKAVVLE
PNKEDVAMAEEAARHADAEAQSKPQNAGDEEDNAPVEVLKPSRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAARKAQAQQEADEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERKS
SKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEKE
RAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=449254 FOC66_RS04900 WP_003747222.1 1039658..1040803(-) (tpc) [Neisseria mucosa strain FDAARGOS_758]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGTCGTAACCGCCG
TCGCTTGGTCTTGGCTTCCGGCTTGGTGGTGGCATCGGGTATGCTGTTCGGTCTGGCACTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCCCCTGTCGGTCAGACTCAAGTCAAAACGGCTGATGAGCCCAGCAAGGCTGTTGTCCTAGAG
CCGAATAAAGAGGATGTTGCGATGGCTGAAGAAGCAGCCCGCCATGCGGATGCCGAAGCGCAAAGCAAACCTCAAAATGC
CGGCGATGAAGAAGATAATGCGCCGGTCGAAGTGCTGAAGCCGAGCCGTGAATCCGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATCAACGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCCGAGCGTATTCAACGCGCCGAGGCT
GCCAAACGCGAAGCTGCTGAACGCCGAGCCGAAGAACGCCGCCAACGCCAGGCAGAACAACGTGCTGCGGCACGCAAGGC
ACAAGCCCAACAGGAAGCGGATGAAAAAGAAAACGCATTGGCCGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAAAAG
CAGAGCGTGAAGCCGCTGCTGAGCGTAATAAATTAGCTCAATTGGAAAAGGCAGAGAAAGCCATTGCCGAGCGTAAATCT
TCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCTAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAAAAA
TGAAAAGGCTAAACCGGAAACTGCCAAAGCTGAAAAAGCAGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAGCTA
AGCCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCCGCTATTCAGGCTGGTTATGCTGAAAAAGAA
CGCGCACAAAGTCTGCAACGTAAAATGAAAGCGGCAGGCATCGATTCGACCATTACTGAAGTCATGACCGATAAAGGTAA
GGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCCGAGCGTGATTTGAACAAATTGCGAGTACATGGCA
TTGCCGGTCAGGTAACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(308-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.235

100

0.507