Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   FOC66_RS04800 Genome accession   NZ_CP053939
Coordinates   1018997..1022653 (+) Length   1218 a.a.
NCBI ID   WP_172884819.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013997..1027653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS04795 (FOC66_04795) - 1015093..1018851 (+) 3759 WP_003747182.1 hemagglutinin repeat-containing protein -
  FOC66_RS04800 (FOC66_04800) recB 1018997..1022653 (+) 3657 WP_172884819.1 exodeoxyribonuclease V subunit beta Machinery gene
  FOC66_RS04805 (FOC66_04805) - 1022713..1023444 (-) 732 WP_003747188.1 phosphoadenylyl-sulfate reductase -
  FOC66_RS04810 (FOC66_04810) dinB 1023560..1024618 (-) 1059 WP_003747190.1 DNA polymerase IV -
  FOC66_RS04815 (FOC66_04815) - 1024696..1025745 (-) 1050 WP_172884833.1 sulfate ABC transporter substrate-binding protein -
  FOC66_RS04820 (FOC66_04820) - 1026133..1026969 (+) 837 WP_003747194.1 DUF4198 domain-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138391.49 Da        Isoelectric Point: 5.5906

>NTDB_id=449252 FOC66_RS04800 WP_172884819.1 1018997..1022653(+) (recB) [Neisseria mucosa strain FDAARGOS_758]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLDGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGDLQEAQAK
LQETWQKICVQLEDLEKAFWAIFPKLNGQTYKRNTFENVFADLKTNAESNRLPRLNKKTLEKLNHFSVDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSEVSASRAESRLSPHRPAIQVRWLNTDDQTGKEILRSRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAARHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTDNHETE
LLAKSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPEAGRESVSQSYQSATDVV
EMLKTNWQRFIKNAPENTEFTFTEEAPPETIYQYSRQQDQALNAQSIKRRNFDFIRHTSFTGLSRHTKSSDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSTML
DTCRLTPLIGESLSQIPPSRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGHVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLPKITIRYLFLRGMDGSDRGIWK
WDIDTALLSTFVERKTNA

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=449252 FOC66_RS04800 WP_172884819.1 1018997..1022653(+) (recB) [Neisseria mucosa strain FDAARGOS_758]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACCCTTTCCATCGACGGCACCAACCTCATCGAAGCCTCCGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCGGCAACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATCCAAACCTTGGACGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGCTTGATTCCTTTGGCTTTAGGCGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCAGCACTGAGCCAGTTTGACAACGCCTCGATTTACACCATCCACGGCTTCTGTCAGCGCGTCTTGCGCGATTAC
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCGCGCGAGAGGCTGCTGATTCCTGCGCAAGACTT
TTGGCGGCAGAAAGTGGCAACCGATGCCACATTGGCACAATTGGTTTTTGACCGGAAATGCACGCCCGAAGAAATGCTTG
CCGAAATTAAAAGCTACACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCGATTTGCAAGAAGCTCAAGCCAAG
CTTCAAGAAACATGGCAAAAAATTTGCGTCCAGTTGGAAGACTTGGAAAAAGCGTTTTGGGCAATTTTTCCCAAACTGAA
CGGCCAGACCTACAAAAGAAATACCTTTGAAAATGTTTTTGCCGATTTAAAAACAAACGCCGAATCCAACCGTCTGCCCC
GCCTGAACAAAAAAACGCTGGAAAAATTAAACCATTTCAGTGTCGACACACTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCTCCGGAAATTATTCAGCTGCAAGCCTTGGCCAATCTCGGTCGTGATTTGCAGGCAATGGAAAGCGC
GGAAGAAGCGGTCTTTATCTGCCTGCAACTCGACCTCCTTTCCTACATCAACCAATCTATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGACGTCCATCAGGCATTGACCACCAATGAACACGGCAACGCATTGGCA
AAAGCGGCGGCGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCATTGCAGTACGAAATTTTCCG
CCAAATTTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACACCCCTTCGTGTTGGAAAACATCGATTACAGCGAGGTCTC
CGCCAGCCGCGCCGAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGATCAAACCG
GCAAAGAGATTTTGCGCAGCCGAGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAATTTCAAAGGCCGCGCGTTGGAATCCGGCGACATTGCCGTCTTGGTGCGTACCAACAACGAAGCGGCGATGAT
TGCCGGTAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCAGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAGACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTGTTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACATCAGCTGCTGAAATGGCTGGAGTCGTCAGCCGAGGC
CATGGAAAAATGGCGGAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCGACATGACATCGAAACACGCCTGC
TCAAGGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTTTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGTTAAACGAACAAATCAGCCGCGCGCGCAGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAATTGGTCAAAATCGTTACCATGCACGCGTCGAAAGGTTTGCAATACCCTTTGGTTT
ACTGCCCCTTCGCGTGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTACATACGGACAACCACGAAACCGAG
CTGCTGGCCAAATCGCAAACCTCGGAAGCGGAACTAAGCCATCTGGCCGACGAAAAGACGGCGGAAGATTTACGCCTGCT
TTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCTGCCGCCAACAAAAACTGTACGCCGAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCAGAGGCCGGCCGCGAAAGCGTCAGCCAAAGCTATCAAAGCGCGACAGATGTTGTA
GAAATGCTCAAAACCAACTGGCAACGCTTTATCAAAAATGCACCCGAAAATACGGAATTCACCTTTACGGAAGAAGCCCC
GCCAGAAACCATCTATCAATACAGCCGCCAACAAGACCAAGCTTTGAATGCACAGAGCATTAAACGCCGCAATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCCGGCACACCAAGTCAAGCGACGAGCAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGTGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCGCTTTCAGACGGCCTCGATATCCA
TCATTTCCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGCTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTACAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGTACCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCGGCGAGAGCCTGTCGCAGATTCCGCCGAGCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTACGCCGTTGGTTTGCCTCAAGCGAAGCAAACCTGCCACCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTACAAGGCTATTTGAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCCATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCGTACACGCAACAGGCGAT
GAACGAAGCCGTGGCACATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATCGCGCGCTACTATGCCCTGC
GCGGCAAGCCCTTGCCCAAAATCACCATCCGCTACCTCTTCCTGCGCGGCATGGACGGCTCGGATCGAGGCATTTGGAAA
TGGGACATCGATACCGCCCTGCTTTCCACTTTTGTCGAGCGAAAAACAAATGCTTGA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(996-1190)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.747

98.933

0.601