Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FOC66_RS04410 Genome accession   NZ_CP053939
Coordinates   945072..945737 (+) Length   221 a.a.
NCBI ID   WP_003747038.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940072..950737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS04390 (FOC66_04390) - 940096..940941 (+) 846 WP_003747031.1 DUF817 domain-containing protein -
  FOC66_RS04395 (FOC66_04395) - 941002..942543 (-) 1542 WP_003747033.1 OFA family MFS transporter -
  FOC66_RS04400 (FOC66_04400) - 942769..943350 (-) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  FOC66_RS04405 (FOC66_04405) dnaB 943505..944911 (+) 1407 WP_036493702.1 replicative DNA helicase -
  FOC66_RS04410 (FOC66_04410) pilH 945072..945737 (+) 666 WP_003747038.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FOC66_RS04415 (FOC66_04415) pilV 945753..946418 (+) 666 WP_003747039.1 type IV pilus modification protein PilV -
  FOC66_RS04420 (FOC66_04420) pilJ 946421..947356 (+) 936 WP_003747040.1 hypothetical protein Machinery gene
  FOC66_RS04425 (FOC66_04425) pilK 947335..947883 (+) 549 WP_003747042.1 pilus assembly protein Machinery gene
  FOC66_RS04430 (FOC66_04430) pilL 947888..948376 (+) 489 WP_003747044.1 PilX family type IV pilin Machinery gene
  FOC66_RS04435 (FOC66_04435) - 948428..949048 (-) 621 WP_003747047.1 Smr/MutS family protein -
  FOC66_RS04440 (FOC66_04440) - 949184..949561 (+) 378 WP_003747049.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24385.58 Da        Isoelectric Point: 8.4439

>NTDB_id=449248 FOC66_RS04410 WP_003747038.1 945072..945737(+) (pilH) [Neisseria mucosa strain FDAARGOS_758]
MYQTQKGFTLIELLIVITIAAVMAVIAFPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNGDSSYKNDTVDLSVRSIILNGDTDKVEYSFNYIPIGNDRSTLSTSASKEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSAADAETKKARATVLLVNGNGHVEICAKNDERKICEYTSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=449248 FOC66_RS04410 WP_003747038.1 945072..945737(+) (pilH) [Neisseria mucosa strain FDAARGOS_758]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATAGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ATTTCCAAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGTTTCG
CGCGAAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCTAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGGAGATTCCAGCTATAAAAACGATAC
AGTCGATTTATCCGTCCGCTCCATTATCCTTAATGGGGATACCGACAAAGTGGAATACAGCTTCAACTATATCCCTATCG
GCAATGACCGTTCCACCCTCTCGACCTCAGCTTCAAAAGAAGTCTGGTGGAGATTCCTGCCCAATGGTACATTTGGCCAT
TCAACCGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTGACGGATAAATCCGCCGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAGTCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATATGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-200)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.26

100

0.548