Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   FOC66_RS04425 Genome accession   NZ_CP053939
Coordinates   947335..947883 (+) Length   182 a.a.
NCBI ID   WP_003747042.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942335..952883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS04400 (FOC66_04400) - 942769..943350 (-) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  FOC66_RS04405 (FOC66_04405) dnaB 943505..944911 (+) 1407 WP_036493702.1 replicative DNA helicase -
  FOC66_RS04410 (FOC66_04410) pilH 945072..945737 (+) 666 WP_003747038.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FOC66_RS04415 (FOC66_04415) pilV 945753..946418 (+) 666 WP_003747039.1 type IV pilus modification protein PilV -
  FOC66_RS04420 (FOC66_04420) pilJ 946421..947356 (+) 936 WP_003747040.1 hypothetical protein Machinery gene
  FOC66_RS04425 (FOC66_04425) pilK 947335..947883 (+) 549 WP_003747042.1 pilus assembly protein Machinery gene
  FOC66_RS04430 (FOC66_04430) pilL 947888..948376 (+) 489 WP_003747044.1 PilX family type IV pilin Machinery gene
  FOC66_RS04435 (FOC66_04435) - 948428..949048 (-) 621 WP_003747047.1 Smr/MutS family protein -
  FOC66_RS04440 (FOC66_04440) - 949184..949561 (+) 378 WP_003747049.1 hypothetical protein -
  FOC66_RS04445 (FOC66_04445) trpE 949697..951172 (+) 1476 WP_003747051.1 anthranilate synthase component I -
  FOC66_RS04450 (FOC66_04450) - 951238..951849 (+) 612 WP_003747053.1 hypothetical protein -
  FOC66_RS04455 (FOC66_04455) - 951853..952176 (+) 324 WP_003747054.1 hypothetical protein -
  FOC66_RS04460 (FOC66_04460) - 952186..952806 (+) 621 WP_003747056.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20411.25 Da        Isoelectric Point: 8.4471

>NTDB_id=449250 FOC66_RS04425 WP_003747042.1 947335..947883(+) (pilK) [Neisseria mucosa strain FDAARGOS_758]
MRRPITLIKPERQQGYALFIVLMMMIVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTNF
TKECKDGFCATPNVKSDSEAIEETATEDAWKRKCDKNQNLCIDANGKEYSLGKNSGIAKNPRYIIEYLGKTTEGRITYRV
TAKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 549 bp        

>NTDB_id=449250 FOC66_RS04425 WP_003747042.1 947335..947883(+) (pilK) [Neisseria mucosa strain FDAARGOS_758]
ATGCGCCGACCGATCACTCTAATTAAACCCGAACGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGATCGT
CATCGCCCTGCTCGTGGTTACAGCCACCCAGTCCTACAATACCGAGCAGCGTATCAGCACCAACGATGCCGACCGCAAAC
TGGCAACCACCCTAGCCGAAGCCGCATTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGGAAAAAGACTAATTTT
ACCAAAGAGTGTAAAGATGGTTTTTGCGCCACACCTAACGTGAAATCTGACAGCGAAGCCATCGAAGAAACCGCTACTGA
AGATGCCTGGAAAAGAAAATGTGATAAAAATCAAAATCTTTGCATCGATGCCAACGGTAAAGAATACTCTCTAGGTAAAA
ATAGCGGCATTGCAAAAAATCCACGCTACATTATCGAATATTTAGGTAAAACTACTGAGGGTCGAATTACCTACCGCGTT
ACTGCCAAAGCATGGGGTAAGAATGCCAATACCCAAGTCGTCCTTCAGTCTTACGTCGCCAGCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(87-180)

PilX N-terminal (PilX_N)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

53.731

100

0.593