Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   FOC66_RS04110 Genome accession   NZ_CP053939
Coordinates   882732..884495 (-) Length   587 a.a.
NCBI ID   WP_003746930.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877732..889495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS04090 (FOC66_04090) tilS 878333..879601 (-) 1269 WP_231288081.1 tRNA lysidine(34) synthetase TilS -
  FOC66_RS04095 (FOC66_04095) - 879777..880736 (-) 960 WP_003746925.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  FOC66_RS04100 (FOC66_04100) - 880941..881342 (+) 402 WP_003746927.1 RNA-binding S4 domain-containing protein -
  FOC66_RS04105 (FOC66_04105) - 881436..882635 (-) 1200 WP_003746928.1 hypothetical protein -
  FOC66_RS04110 (FOC66_04110) recD 882732..884495 (-) 1764 WP_003746930.1 exodeoxyribonuclease V subunit alpha Machinery gene
  FOC66_RS04115 (FOC66_04115) lolD 884631..885314 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FOC66_RS04120 (FOC66_04120) - 885307..886557 (-) 1251 WP_003746931.1 lipoprotein-releasing ABC transporter permease subunit -
  FOC66_RS04125 (FOC66_04125) - 886772..887059 (+) 288 WP_003683377.1 hypothetical protein -
  FOC66_RS04130 (FOC66_04130) recR 887122..887727 (-) 606 WP_003746933.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64823.04 Da        Isoelectric Point: 5.6669

>NTDB_id=449245 FOC66_RS04110 WP_003746930.1 882732..884495(-) (recD) [Neisseria mucosa strain FDAARGOS_758]
MNPTDSILSSAADAAIAFFRRREVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDTLSNLPNLVGNADKPLILQGRKLF
LGRMCQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKERPQALSQ
NNAKLTFSHRFGVDSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVTENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTEGEEETRGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALERQFEQTDMQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=449245 FOC66_RS04110 WP_003746930.1 882732..884495(-) (recD) [Neisseria mucosa strain FDAARGOS_758]
ATGAACCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCGTGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTCGATACCTTAAGCAACTTGCCGAATTTGGTCGGCAATGCGGATAAACCGCTTATCCTGCAAGGCAGGAAATTGTTT
TTAGGGCGGATGTGTCAGTTGGAGCATGATTTGGCTGTCGAAATCAAACGGCTGGCAAGTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGTGATTGGTTTGATCCTAAAGACAGCAAAGAGCAACGGGATGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACCACGACCGTCGCAAAGCTTTTGGGTCTG
ATTTGTAATAACAGTACGAAGCTGCCCCGTATTGCGTTGGCTGCGCCGACGGGCAAGGCGGCTGCGCATATGGCACGGGC
TTTGCAGCGTGCTTTGGATGGCTTTGATTTGTCTCCAAGCATTAAAGCGCATTTGGAAAACTTGGAAGGACAGACTGTCC
ATCGATTGTTGAAATTGCGGCCGCCGCAAATGCGTCCTGCGTTCAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGCGCCGTGCCGACCGGTTGTCGTCTGGTGTT
GCTGGGCGATGAAAACCAGTTGCCGTCGGTTGGTCTGGGTGCCGTATTGGCGGCGTTGTCGCGTCCGACGGCTTTGGATA
AAGAAACTGCTGAAAAGCTGGAAGTTTATCTGCCCAATCATGGCTTTGAGATTAAAGAGCGGCCTCAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGCGTAGACAGCGGTATCGGCTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAGTTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCGCTTTACTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGACAGAGAATAATGTCGCACTCGCCTACGGTCATGCG
GCAGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATATCTGCAACGGCA
AGGTAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACCCACAATGATTACATGCTGGAAGTGT
TTAACGGCGATATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTTAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCACAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTTTTGCCGCCGTCAGTGCCTGCAACGACGGAGGGCGAGGAGGAAACCCGAGGGTTGGATAAGG
CTTTGCTTTACACAGCCATTACCCGCGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGGCCGATGCCTTGGAACGGCAGTTTGAACAAACTGATATGCAGGCTTCTGT
TTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_19)

(127-278)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.925

98.296

0.579