Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FOC66_RS01205 Genome accession   NZ_CP053939
Coordinates   270064..272103 (+) Length   679 a.a.
NCBI ID   WP_036493777.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 265064..277103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS01190 (FOC66_01190) grxC 265801..266058 (+) 258 WP_003684090.1 glutaredoxin 3 -
  FOC66_RS01195 (FOC66_01195) secB 266080..266514 (+) 435 WP_003745844.1 protein-export chaperone SecB -
  FOC66_RS01200 (FOC66_01200) - 266770..269814 (+) 3045 WP_036493548.1 TonB-dependent receptor -
  FOC66_RS01205 (FOC66_01205) recG 270064..272103 (+) 2040 WP_036493777.1 ATP-dependent DNA helicase RecG Machinery gene
  FOC66_RS01210 (FOC66_01210) gdhA 272168..273502 (-) 1335 WP_003745850.1 NADP-specific glutamate dehydrogenase -
  FOC66_RS01215 (FOC66_01215) - 273915..274709 (+) 795 WP_003745852.1 thymidylate synthase -
  FOC66_RS01220 (FOC66_01220) - 274769..276145 (-) 1377 WP_003745854.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74983.83 Da        Isoelectric Point: 6.9966

>NTDB_id=449240 FOC66_RS01205 WP_036493777.1 270064..272103(+) (recG) [Neisseria mucosa strain FDAARGOS_758]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAT
SLGGDGTLTQALRHALPFALTDAQEKVVSEILHDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=449240 FOC66_RS01205 WP_036493777.1 270064..272103(+) (recG) [Neisseria mucosa strain FDAARGOS_758]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATCACCGATGTTTCCGCTAAGAAGCTAGAGAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGACGCGCCGATCGGTG
TGCCGTGTCAGGTTGAGGGCGAGGTCATCCATCAGGAAGTCACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATCGCC
GACGGTTCCGGCAGCGTCCTTTTTTTGCGCTTCATTCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGCGCCGTGGGTGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCACCCTAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACGCCGCTGCACGACACCTTGCCTGATGCTTTATTAGGCCGTCTGAAACTGCCACACCTCGCTGA
AAGCCTGCGCCTTTTGCACTCTCCGCCGCCGAGTTTCACTATTCATCAACTTTCAGATGGCACGCTGCCTGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCACAACAGCTTTCCATGCGCTTGGCGCGACAGAAGCGTGTCAGCGGCACGGCGACG
TCATTGGGCGGCGACGGCACATTGACTCAAGCCTTGCGTCATGCTTTGCCGTTTGCCCTGACCGATGCACAAGAAAAAGT
TGTTTCCGAAATCCTCCACGATATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTTGCTGCTTTGTCCGCGCTGACCGCCATTGAATCCGGCGCGCAGGTGGCTGTAATGGCACCAACCGAAATCCTT
GCTGAACAGCATTTTATCAAGTTTAAACAATGGCTTGAGCCTTTAGGTCTTGAAGTCGTCTGGCTTTCCGGCAGTCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTTGCCGACGGCACCGTCAAAATCGCCGTCGGCACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGACGCGACGTCCACCAGCTGATGATGTCCGCCACCCCCATCCCGCGCACGCTCGCCATGAGTTTCTT
CGCCGACTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGACGCACCCCGATTAAAACCCGCCTCGTCAACAATGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACTGAAACCCTAGCCCAGCTTCAGGCGGCATTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGTAGGTCGTCTGAATGTATTGG
TCGCCACCACCGTCATCGAAGTCGGCGTAGATGTACCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGACGGGTAGGACGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTATTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATTTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTCGCCAATCTCGAAGAAGAC
CTGCACCTCTTGGAACAGGCGCGCGAAATCGCCCCCTTGCTGATTGAACAAAACCCCGAAATCGTCGAAGCACATTTGGC
AAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(14-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.667

100

0.937