Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   FOC66_RS00365 Genome accession   NZ_CP053939
Coordinates   83328..86630 (+) Length   1100 a.a.
NCBI ID   WP_003745544.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78328..91630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS00340 (FOC66_00340) - 78880..79200 (-) 321 WP_003745535.1 accessory factor UbiK family protein -
  FOC66_RS00345 (FOC66_00345) - 79325..80389 (-) 1065 WP_003745538.1 DUF1176 domain-containing protein -
  FOC66_RS00350 (FOC66_00350) metK 80557..81726 (-) 1170 WP_003745540.1 methionine adenosyltransferase -
  FOC66_RS00355 (FOC66_00355) - 82119..83000 (+) 882 WP_003745542.1 lysophospholipid acyltransferase family protein -
  FOC66_RS00365 (FOC66_00365) recC 83328..86630 (+) 3303 WP_003745544.1 exodeoxyribonuclease V subunit gamma Machinery gene
  FOC66_RS00370 (FOC66_00370) - 86634..87131 (+) 498 WP_003745546.1 thioredoxin family protein -
  FOC66_RS00375 (FOC66_00375) lapB 87255..88424 (-) 1170 WP_003745547.1 lipopolysaccharide assembly protein LapB -
  FOC66_RS00380 (FOC66_00380) - 88450..88773 (-) 324 WP_003745549.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  FOC66_RS00385 (FOC66_00385) ilvE 88987..89985 (+) 999 WP_036493516.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1100 a.a.        Molecular weight: 124948.52 Da        Isoelectric Point: 4.6195

>NTDB_id=449237 FOC66_RS00365 WP_003745544.1 83328..86630(+) (recC) [Neisseria mucosa strain FDAARGOS_758]
MFYLYQSDRLEALAEMCAHIHQALPLDAVLAPEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLAEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPPSER
LYQQEEGEAGAQQAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNI
EPYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLH
EAVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGYGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQW
QEPADVEGWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGI
TFCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRND
AEFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPAEAQPFFLEAL
SQEEPGKTIQQGELISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIRLNAES
LMPVGELGGLWQKQYQISAKNVDAELIRSDKRPSEPYELHFDDLVVQGTIGNLYECGRIVFQNQKDNAPNRIARLLEHLI
FCAVAPQSVANRQTYIVSLGQTETYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYGKKEDWDAALRKAH
DVFNGNKMSKGQKEYTEVKLVFGHSDEAPLEEPLFENLVVNLLVPLLNSAAGKNNTTEQE

Nucleotide


Download         Length: 3303 bp        

>NTDB_id=449237 FOC66_RS00365 WP_003745544.1 83328..86630(+) (recC) [Neisseria mucosa strain FDAARGOS_758]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCACCGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGGTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCGGCCGGTCTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGCGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AAATGGCGGATATTTTCGACCAATATTTGGTGTACCGGCCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGTTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTCGTATTCGGTATTTCAACAATGG
CGCCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCGCTCAACCCGAGCAGCCAG
TATTGGGGCGAGGTCATCGACGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAAGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGACGCGATTTCTTTGATTTTCTGGCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAAGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTGATCATGCCGCCGTCTGAACGC
TTATATCAACAGGAAGAAGGCGAGGCAGGCGCGCAGCAGGCTTGGGTTCAGGTTCACGATGCGGACGGCAATCCGGTGTG
TGTCGAGCCGGACAAGCTGTTGAACGACGGTTCGGTCAAAATCGTCGCGGCCCACAGTCCTTTGCGCGAACTGCAGATTT
TGAAAGAAGAGCTGTCGCTGGTGTTGCAAAATAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATC
GAGCCGTACAGCCCGTTTATCGAAGCCGTTTTTGGACAGGAGCAGGCGGGCAGCCAGGCGTTGCCGTATTCGATTTCGGA
TGTAAAACTCAGCCGCCGTCAGCCCTTGTTGTATGCTTTGGCGCAAACGTTGGACTTGCTGGAAAGCCGGTTTGAAGTGG
ACAAGGTTTTACCTTTGCTGGAAAGCCGGTTGGTGCTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCACTGCTGCAT
GAGGCTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGTAAAGACAACCTCTTTACTTGGCA
GCAGGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGCGGCTACGGCATGTGGCAGGGTGTGAGCGCGTGGC
ATAGCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGG
CAAGAGCCTGCCGATGTGGAAGGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGA
CCAATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGT
TGCCGTGTAAAACCGTTATCCGCCATATCCGCCGTTTTTTGGACAGTGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATC
ACTTTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGCTGGGTTTGAATGACGGCGATTTTCC
GCGCAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACC
GTTATCTCTTCCTCGAAGCCTTAATCAGCGCACGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGAT
GCCGAGTTTGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCCGCCATGACGGGGAAAAGCGGGCGTGAGTT
GTCGGAGAAATGGGTGAAACATCATCCTTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCC
TCTTCAGCACGCGCCAAGATTACGCCGATGCGCTGAACCAACCGCCTGCGGAAGCGCAGCCGTTTTTCCTTGAGGCTTTA
AGTCAGGAAGAACCGGGCAAAACCATTCAGCAGGGCGAGCTTATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAA
GAGAAATTTAAGCTGGGATCAGCCGTATTTGGACGGCGCCTGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGCC
GGATTGCCGATGCCTATTTGGATGCGCGGCGCAAAGGGGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGC
CTGATGCCGGTAGGCGAGTTGGGCGGCTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGCTGAT
ACGCAGTGACAAAAGGCCGTCTGAACCTTATGAATTACACTTTGACGACTTGGTTGTACAAGGCACCATCGGCAATCTTT
ACGAATGCGGACGCATTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATT
TTTTGTGCCGTCGCCCCTCAATCCGTTGCCAACCGACAAACCTATATTGTCAGCCTGGGACAGACCGAAACCTATGCCGC
CATCGGGCAAGAGGCCGCGAGAGAGCTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGT
TTTTCGCCAAAACCAGCCTTGCCGCGGCGGAGGAGTACGGCAAAAAAGAGGATTGGGATGCCGCCTTGAGAAAAGCCCAT
GATGTTTTTAACGGCAATAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGTCATTCGGACGA
AGCGCCGCTTGAAGAGCCACTATTTGAAAACCTTGTCGTCAATCTGCTTGTTCCGCTTTTGAACAGCGCTGCAGGGAAAA
ACAATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(807-1025)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.69

99.636

0.645