Detailed information NTG0449181

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FOC88_RS26025
• Genome accession: NZ_CP053934
• Coordinates: 4938367..4939494 (-)
• Length: 375 a.a.
• NCBI ID: WP_000470750.1
• Uniprot ID: A0A2C3GXQ0
• Organism: Bacillus thuringiensis strain FDAARGOS_794
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4933367..4944494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC88_RS26015 (FOC88_26010)	gyrA	4933846..4936317 (-)	2472	WP_001282851.1	DNA gyrase subunit A	-
FOC88_RS26020 (FOC88_26015)	gyrB	4936406..4938328 (-)	1923	WP_000435993.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
FOC88_RS26025 (FOC88_26020)	recF	4938367..4939494 (-)	1128	WP_000470750.1	DNA replication/repair protein RecF	Machinery gene
FOC88_RS26030 (FOC88_26025)	yaaA	4939507..4939719 (-)	213	WP_000821367.1	S4 domain-containing protein YaaA	-
FOC88_RS26035 (FOC88_26030)	dnaN	4939847..4940986 (-)	1140	WP_001212527.1	DNA polymerase III subunit beta	-
FOC88_RS26040 (FOC88_26035)	dnaA	4941165..4942505 (-)	1341	WP_000428021.1	chromosomal replication initiator protein DnaA	-
FOC88_RS26045 (FOC88_26040)	rpmH	4943071..4943205 (+)	135	WP_000831901.1	50S ribosomal protein L34	-
FOC88_RS26050 (FOC88_26045)	rnpA	4943282..4943641 (+)	360	WP_000726628.1	ribonuclease P protein component	-
FOC88_RS26055 (FOC88_26050)	spoIIIJ	4943681..4944448 (+)	768	WP_000727748.1	YidC family membrane integrase SpoIIIJ	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43334.66 Da
• Isoelectric Point: 6.7809

>NTDB_id=449181 FOC88_RS26025 WP_000470750.1 4938367..4939494(-) (recF) [Bacillus thuringiensis strain FDAARGOS_794]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide

• Length: 1128 bp

>NTDB_id=449181 FOC88_RS26025 WP_000470750.1 4938367..4939494(-) (recF) [Bacillus thuringiensis strain FDAARGOS_794]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A0A2C3GXQ0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	66.304	98.133	0.651