Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GGS_RS06970 Genome accession   NC_018712
Coordinates   1420265..1420927 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415265..1425927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS06955 (GGS_1319) sodA 1416219..1416824 (-) 606 WP_003054499.1 superoxide dismutase SodA -
  GGS_RS06960 (GGS_1320) holA 1416914..1417960 (-) 1047 WP_015017201.1 DNA polymerase III subunit delta -
  GGS_RS06965 (GGS_1321) comEC/celB 1418041..1420284 (-) 2244 WP_015017202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GGS_RS06970 (GGS_1322) comEA 1420265..1420927 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  GGS_RS06975 (GGS_1323) - 1421324..1422064 (-) 741 WP_003062277.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  GGS_RS06980 (GGS_1324) - 1422182..1422958 (+) 777 WP_148275174.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GGS_RS06985 - 1422948..1423226 (+) 279 WP_003061674.1 GIY-YIG nuclease family protein -
  GGS_RS06990 (GGS_1325) - 1423250..1425250 (-) 2001 WP_003061221.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=44918 GGS_RS06970 WP_003057999.1 1420265..1420927(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=44918 GGS_RS06970 WP_003057999.1 1420265..1420927(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGCAAAGAGCAGAGTCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTAAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAAGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368

Multiple sequence alignment