Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC88_RS25825 Genome accession   NZ_CP053934
Coordinates   4901800..4902084 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4896800..4907084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS25810 (FOC88_25805) rnmV 4897622..4898179 (-) 558 WP_000692830.1 ribonuclease M5 -
  FOC88_RS25815 (FOC88_25810) - 4898394..4899161 (-) 768 WP_000895823.1 TatD family hydrolase -
  FOC88_RS25820 (FOC88_25815) metG 4899327..4901336 (-) 2010 WP_071735796.1 methionine--tRNA ligase -
  FOC88_RS25825 (FOC88_25820) abrB 4901800..4902084 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC88_RS25830 (FOC88_25825) rsmI 4902105..4902980 (-) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FOC88_RS25835 (FOC88_25830) - 4902949..4903239 (-) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  FOC88_RS25840 (FOC88_25835) - 4903226..4903966 (-) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FOC88_RS25845 (FOC88_25840) yabA 4904087..4904437 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  FOC88_RS25850 (FOC88_25845) - 4904452..4905279 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  FOC88_RS25855 (FOC88_25850) holB 4905285..4906268 (-) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  FOC88_RS25860 (FOC88_25855) tmk 4906304..4906930 (-) 627 WP_000677237.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=449179 FOC88_RS25825 WP_000843036.1 4901800..4902084(+) (abrB) [Bacillus thuringiensis strain FDAARGOS_794]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=449179 FOC88_RS25825 WP_000843036.1 4901800..4902084(+) (abrB) [Bacillus thuringiensis strain FDAARGOS_794]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851