Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   STCNRZ385_RS08105 Genome accession   NZ_CP065495
Coordinates   1558942..1559181 (-) Length   79 a.a.
NCBI ID   WP_011681565.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ385     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553942..1564181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS08075 (STCNRZ385_08060) - 1555666..1556046 (-) 381 WP_002951783.1 hypothetical protein -
  STCNRZ385_RS08080 (STCNRZ385_08065) - 1556171..1556434 (-) 264 WP_002945924.1 hypothetical protein -
  STCNRZ385_RS08085 (STCNRZ385_08070) - 1556756..1557052 (-) 297 WP_004197070.1 bacteriocin immunity protein -
  STCNRZ385_RS08090 (STCNRZ385_08075) - 1557217..1558143 (-) 927 WP_022096485.1 thioredoxin family protein -
  STCNRZ385_RS08095 (STCNRZ385_08080) - 1558330..1558509 (-) 180 WP_011681564.1 hypothetical protein -
  STCNRZ385_RS08100 (STCNRZ385_08085) - 1558538..1558930 (-) 393 WP_003094909.1 hypothetical protein -
  STCNRZ385_RS08105 (STCNRZ385_08090) cipB 1558942..1559181 (-) 240 WP_011681565.1 Blp family class II bacteriocin Regulator
  STCNRZ385_RS08110 (STCNRZ385_08095) - 1559398..1560968 (+) 1571 WP_113870474.1 IS3-like element ISSth1b family transposase -
  STCNRZ385_RS08115 (STCNRZ385_08100) - 1561114..1561368 (-) 255 WP_014608660.1 Blp family class II bacteriocin -
  STCNRZ385_RS09985 - 1561619..1562020 (-) 402 WP_024703992.1 hypothetical protein -
  STCNRZ385_RS08120 (STCNRZ385_08105) - 1563025..1563255 (-) 231 WP_014608662.1 bacteriocin class II family protein -
  STCNRZ385_RS08125 (STCNRZ385_08110) - 1563612..1563812 (-) 201 WP_011681569.1 hypothetical protein -
  STCNRZ385_RS08130 (STCNRZ385_08115) - 1563831..1564007 (-) 177 WP_011681570.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 7727.69 Da        Isoelectric Point: 3.8735

>NTDB_id=449177 STCNRZ385_RS08105 WP_011681565.1 1558942..1559181(-) (cipB) [Streptococcus thermophilus strain CNRZ385]
MATQTIENFNTLDLETLASVEGGRVNWERWGMCGASVAVGASEGFSAAAGGTAFFIGPYAIGTGAVGAAIGGGVALLGC

Nucleotide


Download         Length: 240 bp        

>NTDB_id=449177 STCNRZ385_RS08105 WP_011681565.1 1558942..1559181(-) (cipB) [Streptococcus thermophilus strain CNRZ385]
ATGGCAACTCAAACAATTGAAAACTTTAACACCCTCGACCTTGAAACACTTGCTAGTGTTGAAGGAGGACGAGTCAATTG
GGAACGATGGGGAATGTGTGGGGCCTCTGTCGCCGTAGGTGCTTCAGAAGGATTCTCTGCAGCTGCAGGTGGAACGGCTT
TCTTCATTGGACCGTATGCAATTGGAACTGGTGCAGTAGGTGCAGCTATTGGAGGTGGAGTAGCCTTACTTGGCTGTTAA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(7-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

52.459

77.215

0.405