Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FOC88_RS19750 Genome accession   NZ_CP053934
Coordinates   3726020..3726343 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3721020..3731343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS19735 (FOC88_19730) - 3721536..3722903 (-) 1368 WP_000116796.1 aldehyde dehydrogenase -
  FOC88_RS19740 (FOC88_19735) inhA1 3723075..3725462 (-) 2388 WP_042511592.1 M6 family metalloprotease immune inhibitor InhA1 -
  FOC88_RS19745 (FOC88_19740) - 3725806..3725940 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  FOC88_RS19750 (FOC88_19745) sinR 3726020..3726343 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  FOC88_RS19755 (FOC88_19750) calY 3726419..3727012 (-) 594 WP_000053731.1 biofilm matrix protein CalY -
  FOC88_RS19760 (FOC88_19755) - 3727410..3728177 (-) 768 WP_042511593.1 DUF4047 domain-containing protein -
  FOC88_RS19765 (FOC88_19760) - 3728339..3728926 (-) 588 WP_000172840.1 CalY family protein -
  FOC88_RS19770 (FOC88_19765) sipW 3728989..3729558 (-) 570 WP_000767813.1 signal peptidase I SipW -
  FOC88_RS19775 (FOC88_19770) - 3729753..3731039 (-) 1287 WP_000247011.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=449164 FOC88_RS19750 WP_000578878.1 3726020..3726343(+) (sinR) [Bacillus thuringiensis strain FDAARGOS_794]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=449164 FOC88_RS19750 WP_000578878.1 3726020..3726343(+) (sinR) [Bacillus thuringiensis strain FDAARGOS_794]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692