Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC88_RS18425 Genome accession   NZ_CP053934
Coordinates   3480758..3481360 (+) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3475758..3486360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS18380 (FOC88_18375) gpsB 3476139..3476477 (-) 339 WP_000622430.1 cell division regulator GpsB -
  FOC88_RS18385 (FOC88_18380) - 3476575..3477129 (-) 555 WP_000862923.1 DUF1273 domain-containing protein -
  FOC88_RS18390 (FOC88_18385) - 3477186..3477611 (-) 426 WP_000546265.1 CotD family spore coat protein -
  FOC88_RS18395 (FOC88_18390) - 3477767..3478246 (-) 480 WP_000487705.1 YppG family protein -
  FOC88_RS18400 (FOC88_18395) - 3478424..3478615 (+) 192 WP_000242663.1 YppF family protein -
  FOC88_RS18405 (FOC88_18400) - 3478641..3478985 (-) 345 WP_000872959.1 YppE family protein -
  FOC88_RS18410 (FOC88_18405) - 3479001..3479243 (-) 243 WP_001252043.1 hypothetical protein -
  FOC88_RS18415 (FOC88_18410) - 3479329..3479505 (+) 177 WP_001982922.1 hypothetical protein -
  FOC88_RS18420 (FOC88_18415) - 3479629..3480654 (-) 1026 WP_042511565.1 DUF2515 domain-containing protein -
  FOC88_RS18425 (FOC88_18420) recU 3480758..3481360 (+) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  FOC88_RS18430 (FOC88_18425) - 3481426..3484119 (+) 2694 WP_042511568.1 PBP1A family penicillin-binding protein -
  FOC88_RS18435 (FOC88_18430) - 3484143..3484661 (-) 519 WP_000442686.1 YpoC family protein -
  FOC88_RS18440 (FOC88_18435) nth 3484665..3485312 (-) 648 WP_000933025.1 endonuclease III -
  FOC88_RS18445 (FOC88_18440) dnaD 3485328..3486035 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=449162 FOC88_RS18425 WP_000155594.1 3480758..3481360(+) (recU) [Bacillus thuringiensis strain FDAARGOS_794]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=449162 FOC88_RS18425 WP_000155594.1 3480758..3481360(+) (recU) [Bacillus thuringiensis strain FDAARGOS_794]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625